C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044003 Abca6-001 ENSMUSG00000044749 10090 - 11:110176820-110251776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044003
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044003 1.567±0.58 0.225±0.07 0.066±0.02 1.883±0.37 0.071±0.04 0.513±0.33 0.293±0.13 12.590±8.12 0.503±0.08 0.262±0.09 1.696±0.60 0.024±0.02 0.254±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037T CIL_00037T_0002 CGP 11:110100749-110251776

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269081 ABCA10-001 protein_coding Homo_sapiens 0 298
ENST00000284425 ABCA6-001 protein_coding Homo_sapiens 0 1958
ENST00000340001 ABCA9-001 protein_coding Homo_sapiens 0 326
ENST00000453985 ABCA9-002 protein_coding Homo_sapiens 0 326
ENST00000518929 ABCA10-004 nonsense_mediated_decay Homo_sapiens 7e-36 158
ENST00000519732 ABCA10-006 processed_transcript Homo_sapiens 0 298
ENST00000522406 ABCA10-003 nonsense_mediated_decay Homo_sapiens 0 298

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