C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: raftlin, lipid raft linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334133 RFTN1-001 ENSG00000131378 9606 - 3:16315856-16513706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334133
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334133 18.985±0.00 26.840±0.00 4.669±1.19 16.584±12.00 7.895±7.02 5.608±5.14 8.214±0.00 4.271±1.64 15.188±11.29 1.374±1.10 12.367±10.27 24.567±10.00 6.241±4.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HO CIL_0004HO_0001 CGP 3:16257978-16350299
CIL_0002VD CIL_0002VD_0002 CGP 3:16265199-16514026
CIL_0002VC CIL_0002VC_0002 CGP 3:16313574-16670306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001765 IMP membrane raft assembly
GO:0002457 ISS T cell antigen processing and presentation
GO:0003725 IDA double-stranded RNA binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005886 IDA plasma membrane
GO:0032596 ISS protein transport into membrane raft
GO:0032620 ISS interleukin-17 production
GO:0033227 IMP dsRNA transport
GO:0034138 IMP toll-like receptor 3 signaling pathway
GO:0040007 IMP growth
GO:0043234 IDA protein complex
GO:0043330 IMP response to exogenous dsRNA
GO:0045121 IDA membrane raft
GO:0050852 ISS T cell receptor signaling pathway
GO:0050853 IMP B cell receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome
GO:1903044 ISS protein localization to membrane raft

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044503 Rftn1-001 protein_coding Mus_musculus 0 1232
ENSMUST00000156094 Rftn1-003 retained_intron Mus_musculus 0 887
ENSMUST00000113195 Rftn1-002 protein_coding Mus_musculus 0 826

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