C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphate cytidylyltransferase 1, choline, beta isoform
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045898 Pcyt1b-001 ENSMUSG00000035246 10090 + X:93675102-93749951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045898 0.236±0.12 0.251±0.01 0.101±0.01 4.100±1.74 0.334±0.01 0.206±0.00 0.058±0.02 0.008±0.00 4.935±2.01 0.259±0.09 0.040±0.02 1.299±0.43 0.311±0.04 0.147±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W8 CIL_0008W8_0002 VISTA X:93076664-93678616
CIL_0008NM CIL_0008NM_0002 VISTA X:93107742-93710584
CIL_0008NL CIL_0008NL_0002 VISTA X:93128674-93730367
CIL_0008NF CIL_0008NF_0002 VISTA X:93157367-93758875
CIL_0008NE CIL_0008NE_0002 VISTA X:93196691-93798662
CIL_00084H CIL_00084H_0002 VISTA X:93277817-93878339
CIL_00007Q CIL_00007Q_0003 CGP X:93654863-93832201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001541 IMP ovarian follicle development
GO:0004105 IEA choline-phosphate cytidylyltransferase activity
GO:0005783 IEA endoplasmic reticulum
GO:0006657 IEA CDP-choline pathway
GO:0007283 IMP spermatogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356768 PCYT1B-005 protein_coding Homo_sapiens 0 1397
ENST00000379144 PCYT1B-004 protein_coding Homo_sapiens 0 1670
ENST00000379145 PCYT1B-003 protein_coding Homo_sapiens 0 1315
ENST00000496020 PCYT1B-001 nonsense_mediated_decay Homo_sapiens 0 584

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