C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin alpha, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046257 Sptan1-003 ENSMUSG00000057738 10090 + 2:29965717-30031451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000046257
Transcript ID Bladder Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046257 8.944±2.65 9.998±0.00 3.023±0.00 1.828±0.40 12.227±0.27 2.751±0.87 45.679±9.45 16.880±9.41 21.386±24.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EB CIL_0007EB_0002 CGP 2:29935426-30031451
CIL_0002LY CIL_0002LY_0003 CGP 2:29965560-30048881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005516 IEA calmodulin binding
GO:0005916 IDA fascia adherens
GO:0016020 IDA membrane
GO:0016328 IDA lateral plasma membrane
GO:0030018 IDA Z disc
GO:0030507 IDA spectrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0032437 IDA cuticular plate
GO:0033270 IDA paranode region of axon
GO:0046982 IDA protein heterodimerization activity
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102251 spna2-001 protein_coding Danio_rerio 0 3105
ENSDART00000102256 spna2-201 protein_coding Danio_rerio 0 2492
ENST00000358161 SPTAN1-201 protein_coding Homo_sapiens 0 9326
ENST00000372731 SPTAN1-004 protein_coding Homo_sapiens 0 5343
ENST00000372739 SPTAN1-005 protein_coding Homo_sapiens 0 5273
ENST00000461855 SPTAN1-008 processed_transcript Homo_sapiens 0 965
ENST00000472211 SPTAN1-001 processed_transcript Homo_sapiens 0 272
ENST00000475367 SPTAN1-006 processed_transcript Homo_sapiens 0 414
ENST00000491712 SPTAN1-003 processed_transcript Homo_sapiens 0 344

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