C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000102251 spna2-001 ENSDARG00000019231 7955 + 21:11352584-11419552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000102251
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000102251 70.550±8.67 24.082±5.71 5.218±0.00 1.498±0.00 9.602±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LY CIL_0002LY_0001 CGP 21:11352584-11427049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0033268 IDA node of Ranvier
GO:0033270 IDA paranode region of axon
GO:0045162 IMP clustering of voltage-gated sodium channels

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046257 Sptan1-003 protein_coding Mus_musculus 0 3105
ENSMUST00000095083 Sptan1-002 protein_coding Mus_musculus 0 5262
ENSMUST00000100225 Sptan1-004 protein_coding Mus_musculus 0 5347
ENSMUST00000113717 Sptan1-001 protein_coding Mus_musculus 0 3190
ENSMUST00000113719 Sptan1-201 protein_coding Mus_musculus 0 2577
ENSMUST00000143918 Sptan1-005 retained_intron Mus_musculus 0 560
ENSMUST00000149038 Sptan1-008 retained_intron Mus_musculus 0 472
ENST00000358161 SPTAN1-201 protein_coding Homo_sapiens 0 3181
ENST00000372731 SPTAN1-004 protein_coding Homo_sapiens 0 5443
ENST00000372739 SPTAN1-005 protein_coding Homo_sapiens 0 5533
ENST00000472211 SPTAN1-001 processed_transcript Homo_sapiens 0 274
ENST00000475367 SPTAN1-006 processed_transcript Homo_sapiens 0 235

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