C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: two pore channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046426 Tpcn1-201 ENSMUSG00000032741 10090 - 5:120534160-120588613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046426
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046426 15.569±8.10 14.221±1.65 20.964±2.14 6.971±3.01 18.688±2.91 40.944±1.69 9.498±1.37 55.481±1.58 17.237±3.82 16.343±1.47 12.999±2.10 15.126±3.98 33.759±10.96 4.020±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0002 VISTA 5:119987382-120588927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005765 ISS lysosomal membrane
GO:0005886 IBA plasma membrane
GO:0006816 IBA calcium ion transport
GO:0010008 ISS endosome membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IBA ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042802 IEA identical protein binding
GO:0070588 IEA calcium ion transmembrane transport
GO:0072345 ISS NAADP-sensitive calcium-release channel activity
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335509 TPCN1-001 protein_coding Homo_sapiens 0 2876
ENST00000392569 TPCN1-003 protein_coding Homo_sapiens 0 2682
ENST00000428632 TPCN1-004 retained_intron Homo_sapiens 0 1821
ENST00000541517 TPCN1-201 protein_coding Homo_sapiens 0 2867
ENST00000546503 TPCN1-012 retained_intron Homo_sapiens 0 316
ENST00000546781 TPCN1-011 protein_coding Homo_sapiens 0 536
ENST00000546787 TPCN1-007 processed_transcript Homo_sapiens 5.60519e-45 183
ENST00000546907 TPCN1-008 retained_intron Homo_sapiens 0 289
ENST00000547275 TPCN1-015 protein_coding Homo_sapiens 0 344
ENST00000547955 TPCN1-009 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000548465 TPCN1-013 protein_coding Homo_sapiens 0 547
ENST00000550785 TPCN1-002 protein_coding Homo_sapiens 0 2867
ENST00000551127 TPCN1-006 retained_intron Homo_sapiens 0 774
ENST00000552077 TPCN1-005 retained_intron Homo_sapiens 0 2012
ENST00000552542 TPCN1-022 protein_coding Homo_sapiens 0 448
ENST00000552642 TPCN1-017 protein_coding Homo_sapiens 0 331
ENST00000552897 TPCN1-021 protein_coding Homo_sapiens 0 414
ENST00000552985 TPCN1-016 protein_coding Homo_sapiens 0 473

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