C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTP binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046463 Gtpbp1-201 ENSMUSG00000042535 10090 + 15:79690895-79721478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046463 13.626±3.12 15.889±0.71 10.990±1.86 15.293±3.78 19.032±3.47 17.606±1.30 9.509±0.73 12.817±1.16 11.701±7.93 15.915±0.60 9.045±0.45 19.822±3.31 6.375±2.08 9.539±3.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZY CIL_0001ZY_0002 CGP 15:79674250-79721478
CIL_0002XF CIL_0002XF_0002 CGP 15:79690895-79742536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000177 ISS cytoplasmic exosome (RNase complex)
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0005829 ISS cytosol
GO:0006184 ISS GTP catabolic process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding
GO:0061014 ISS positive regulation of mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000146005 gtpbp1-001 protein_coding Danio_rerio 0 902
ENST00000216044 GTPBP1-001 protein_coding Homo_sapiens 0 2800
ENST00000418601 GTPBP1-004 nonsense_mediated_decay Homo_sapiens 0 828
ENST00000458073 GTPBP1-010 protein_coding Homo_sapiens 0 826
ENST00000460605 GTPBP1-006 processed_transcript Homo_sapiens 0 422
ENST00000461428 GTPBP1-015 retained_intron Homo_sapiens 0 505
ENST00000462332 GTPBP1-002 retained_intron Homo_sapiens 0 396
ENST00000470836 GTPBP1-011 protein_coding Homo_sapiens 0 305
ENST00000475959 GTPBP1-007 retained_intron Homo_sapiens 0 364
ENST00000484657 GTPBP1-003 protein_coding Homo_sapiens 0 761
ENST00000484971 GTPBP1-016 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000488787 GTPBP1-005 protein_coding Homo_sapiens 0 481

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