C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of Ty 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046709 Supt16-201 ENSMUSG00000035726 10090 - 14:52160419-52197239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046709 3.812±2.12 8.418±0.82 9.345±3.64 20.012±4.33 3.870±2.06 4.954±2.27 2.392±0.16 3.099±0.61 13.277±12.36 7.669±2.23 2.671±0.43 9.326±11.06 20.803±8.89 32.544±26.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0002 CGP 14:52073380-52163546
CIL_00027P CIL_00027P_0002 CGP 14:52110704-52197239
CIL_00078L CIL_00078L_0002 CGP 14:52160419-52237791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216297 SUPT16H-001 protein_coding Homo_sapiens 0 4543
ENST00000537175 RP11-473N11.2-001 processed_pseudogene Homo_sapiens 0 3677
ENST00000552829 SUPT16H-008 retained_intron Homo_sapiens 0 370
ENST00000555752 SUPT16H-002 retained_intron Homo_sapiens 0 335
ENST00000556217 SUPT16H-007 retained_intron Homo_sapiens 0 944
ENST00000556309 SUPT16H-006 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000557394 SUPT16H-004 retained_intron Homo_sapiens 0 1182
ENST00000557652 SUPT16H-005 nonsense_mediated_decay Homo_sapiens 0 518

Loading