C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047645 Vldlr-006 ENSMUSG00000024924 10090 + 19:27217357-27249727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverPlacentaTestisENSMUST00000047645
Transcript ID Adipose Breast Liver Placenta Testis
ENSMUST00000047645 4.906±0.20 3.835±1.88 1.115±0.16 1.755±0.05 0.086±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0003 CGP 19:27216484-27337179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382096 VLDLR-005 protein_coding Homo_sapiens 0 778
ENST00000382099 VLDLR-002 protein_coding Homo_sapiens 0 3563
ENST00000382100 VLDLR-001 protein_coding Homo_sapiens 0 2390
ENST00000478776 VLDLR-004 processed_transcript Homo_sapiens 0 520

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