C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth regulation by estrogen in breast cancer-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048977 Greb1l-001 ENSMUSG00000042942 10090 + 18:10325179-10562934 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048977
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048977 0.626±0.51 3.053±0.67 0.225±0.08 1.116±0.92 0.104±0.07 0.286±0.04 0.087±0.05 1.251±0.17 0.374±0.36 0.150±0.01 0.031±0.01 7.529±2.95 0.781±0.83 0.360±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O1 CIL_0005O1_0002 CGP 18:10064401-10562934
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057268 greb1l-201 protein_coding Danio_rerio 0 224
ENSDART00000138562 greb1l-001 protein_coding Danio_rerio 0 224
ENST00000269218 GREB1L-010 protein_coding Homo_sapiens 0 4665
ENST00000424526 GREB1L-201 protein_coding Homo_sapiens 0 6695
ENST00000578368 GREB1L-001 processed_transcript Homo_sapiens 0 2608
ENST00000578383 GREB1L-008 retained_intron Homo_sapiens 0 442
ENST00000578955 GREB1L-007 retained_intron Homo_sapiens 0 2451
ENST00000579454 GREB1L-005 protein_coding Homo_sapiens 0 255
ENST00000580384 GREB1L-009 protein_coding Homo_sapiens 0 621
ENST00000580683 GREB1L-011 retained_intron Homo_sapiens 0 324
ENST00000580732 GREB1L-003 protein_coding Homo_sapiens 0 7304
ENST00000581327 GREB1L-006 protein_coding Homo_sapiens 0 584
ENST00000584446 GREB1L-004 retained_intron Homo_sapiens 0 2628

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