C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005O1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000067900-ENSG00000141449 CGP 9606 18:20946906-21525417
GeneTranscriptPositionBiotype
ENSG00000067900 (ROCK1)
Rho-associated, coiled-coil containing protein kinase 1 		ENST00000399799 (ROCK1-001) 20946906-21111851 protein_coding
ENST00000578051 (ROCK1-003) 20953290-20954870 protein_coding
ENST00000582445 (ROCK1-006) 21045045-21049211 retained_intron
ENST00000583556 (ROCK1-005) 20969958-20982783 retained_intron
ENST00000584687 (ROCK1-002) 20954854-20955467 retained_intron
ENST00000584875 (ROCK1-004) 20968485-20969354 retained_intron
ENSG00000141449 (GREB1L)
growth regulation by estrogen in breast cancer-like 		ENST00000269218 (GREB1L-010) 21242358-21522821 protein_coding
ENST00000424526 (GREB1L-201) 21242242-21522830 protein_coding
ENST00000578368 (GREB1L-001) 21366041-21468884 processed_transcript
ENST00000578383 (GREB1L-008) 21485369-21490231 retained_intron
ENST00000578955 (GREB1L-007) 21451099-21508715 retained_intron
ENST00000579454 (GREB1L-005) 21401226-21441407 protein_coding
ENST00000580384 (GREB1L-009) 21513903-21520739 protein_coding
ENST00000580683 (GREB1L-011) 21449741-21451370 retained_intron
ENST00000580732 (GREB1L-003) 21363593-21525417 protein_coding
ENST00000581327 (GREB1L-006) 21449635-21452433 protein_coding
ENST00000584446 (GREB1L-004) 21242242-21455130 retained_intron
ENSG00000244527 (RP11-254G11.1)
 ENST00000473808 (RP11-254G11.1-001) 21119182-21119661 processed_pseudogene
ENSG00000263748 (EXOGP1)
endo/exonuclease (5'-3'), endonuclease G-like pseudogene 1 		ENST00000580616 (EXOGP1-001) 21182503-21183499 processed_pseudogene
ENSG00000265751 (RP11-296E23.1)
 ENST00000584611 (RP11-296E23.1-001) 21380286-21451017 antisense
ENSG00000265948 (RP11-296E23.2)
 ENST00000584331 (RP11-296E23.2-001) 21316878-21317795 sense_intronic
ENSG00000265984 (RP11-699A5.2)
 ENST00000579247 (RP11-699A5.2-001) 21240675-21241371 lincRNA
CIL_0005O1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024290-ENSMUSG00000042942 CGP 10090 18:10064401-10562934
GeneTranscriptPositionBiotype
ENSMUSG00000024290 (Rock1)
Rho-associated coiled-coil containing protein kinase 1 		ENSMUST00000067947 (Rock1-201) 10064401-10181792 protein_coding
ENSMUSG00000042942 (Greb1l)
growth regulation by estrogen in breast cancer-like 		ENSMUST00000048977 (Greb1l-001) 10325179-10562934 protein_coding
ENSMUST00000172532 (Greb1l-003) 10458225-10538289 protein_coding
ENSMUST00000172680 (Greb1l-004) 10510705-10553704 nonsense_mediated_decay
ENSMUST00000173261 (Greb1l-006) 10553786-10558837 processed_transcript
ENSMUST00000173356 (Greb1l-002) 10325177-10502412 retained_intron
ENSMUST00000174553 (Greb1l-005) 10509397-10515502 retained_intron
ENSMUSG00000058567 (Gm2531)
predicted gene 2531 		ENSMUST00000075609 (Gm2531-201) 10145453-10145965 pseudogene
ENSMUSG00000084693 (Gm24894)
predicted gene, 24894 		ENSMUST00000122744 (Gm24894-201) 10551289-10551406 snoRNA
ENSMUSG00000094111 (Gm10349)
predicted gene 10349 		ENSMUST00000179225 (Gm10349-201) 10483083-10483466 processed_pseudogene
ENSMUSG00000095616 (Gm26244)
predicted gene, 26244 		ENSMUST00000083435 (Gm26244-201) 10150977-10151140 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005O1_0001ENSG00000067900ENST00000399799ENST00000578051ENST00000582445ENST00000583556ENST00000584687ENST00000584875ENSG00000141449ENST00000269218ENST00000424526ENST00000578368ENST00000578383ENST00000578955ENST00000579454ENST00000580384ENST00000580683ENST00000580732ENST00000581327ENST00000584446ENSG00000244527ENST00000473808ENSG00000263748ENST00000580616ENSG00000265751ENST00000584611ENSG00000265948ENST00000584331ENSG00000265984ENST00000579247CIL_0005O1_0002ENSMUSG00000024290ENSMUST00000067947ENSMUSG00000042942ENSMUST00000048977ENSMUST00000172532ENSMUST00000172680ENSMUST00000173261ENSMUST00000173356ENSMUST00000174553ENSMUSG00000058567ENSMUST00000075609ENSMUSG00000084693ENSMUST00000122744ENSMUSG00000094111ENSMUST00000179225ENSMUSG00000095616ENSMUST00000083435
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005O1_0001ENSG00000067900ENST00000399799ENSG00000141449ENST00000269218ENST00000424526ENST00000578368ENST00000578955ENST00000580732ENST00000581327ENSG00000244527ENST00000473808ENSG00000263748ENST00000580616ENSG00000265751ENST00000584611ENSG00000265948ENST00000584331ENSG00000265984ENST00000579247CIL_0005O1_0002ENSMUSG00000024290ENSMUST00000067947ENSMUSG00000042942ENSMUST00000048977ENSMUST00000172532ENSMUST00000172680ENSMUST00000173261ENSMUST00000174553ENSMUSG00000058567ENSMUST00000075609ENSMUSG00000084693ENSMUST00000122744ENSMUSG00000094111ENSMUST00000179225ENSMUSG00000095616ENSMUST00000083435
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067900 ENST00000399799 4.100±0.00 5.877±0.00 0.812±0.00 1.045±0.43 2.334±0.57 4.760±1.72 1.878±0.74 2.763±1.97 1.784±0.20 4.291±0.55 1.141±0.00 3.146±0.96 6.082±5.39 6.740±0.46
ENST00000578051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141449 ENST00000269218 N/A N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000424526 N/A N/A N/A N/A 0.169±0.00 N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A 0.517±0.00
ENST00000578368 N/A N/A N/A 0.533±0.00 0.156±0.00 0.246±0.00 N/A N/A N/A N/A N/A 2.100±0.00 N/A N/A
ENST00000578383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578955 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 0.203±0.00 N/A N/A N/A
ENST00000579454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580732 N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A 0.142±0.00 N/A N/A 0.278±0.00
ENST00000581327 N/A N/A N/A N/A N/A 0.461±0.34 N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A
ENST00000584446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244527 ENST00000473808 0.055±0.00 0.313±0.00 N/A 0.143±0.00 0.140±0.00 0.131±0.00 0.053±0.00 0.086±0.03 0.051±0.00 0.107±0.00 0.127±0.00 0.046±0.00 N/A 0.051±0.00
ENSG00000263748 ENST00000580616 N/A 0.039±0.00 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.027±0.00 N/A N/A
ENSG00000265751 ENST00000584611 N/A N/A N/A 0.017±0.00 0.563±0.00 N/A N/A N/A N/A N/A 1.897±0.70 N/A 0.025±0.00 0.469±0.00
ENSG00000265948 ENST00000584331 0.361±0.00 1.046±0.00 N/A 0.439±0.00 0.450±0.00 0.584±0.00 0.200±0.00 1.014±0.00 0.152±0.00 0.091±0.00 N/A 0.539±0.38 N/A 0.316±0.20
ENSG00000265984 ENST00000579247 0.030±0.00 N/A N/A 0.155±0.00 0.056±0.00 N/A 0.139±0.00 N/A N/A N/A N/A 0.080±0.00 N/A 0.055±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024290 ENSMUST00000067947 3.834±1.07 8.485±1.28 4.785±1.30 2.920±1.30 2.731±0.68 4.287±2.23 3.041±0.83 2.952±0.67 2.256±0.75 5.617±1.53 1.211±0.24 6.401±7.16 11.488±10.21 3.118±2.46
ENSMUSG00000042942 ENSMUST00000048977 0.626±0.51 3.053±0.67 0.225±0.08 1.116±0.92 0.104±0.07 0.286±0.04 0.087±0.05 1.251±0.17 0.374±0.36 0.150±0.01 0.031±0.01 7.529±2.95 0.781±0.83 0.360±0.15
ENSMUST00000172532 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000172680 0.318±0.16 4.041±1.27 N/A N/A 0.124±0.05 0.574±0.24 0.078±0.00 0.825±0.18 0.079±0.04 0.129±0.09 0.026±0.00 7.921±1.27 0.253±0.12 0.245±0.04
ENSMUST00000173261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.01 N/A N/A N/A
ENSMUST00000173356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A
ENSMUSG00000058567 ENSMUST00000075609 0.118±0.01 N/A 0.180±0.14 0.368±0.20 N/A 0.357±0.09 0.209±0.00 0.185±0.08 0.135±0.06 0.399±0.23 0.124±0.00 0.372±0.20 0.159±0.05 0.153±0.03
ENSMUSG00000084693 ENSMUST00000122744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.229±10.21 N/A N/A
ENSMUSG00000094111 ENSMUST00000179225 N/A N/A 1.416±0.00 1.899±0.00 N/A N/A 0.138±0.00 N/A 2.951±0.75 N/A N/A N/A 0.023±0.00 N/A
ENSMUSG00000095616 ENSMUST00000083435 N/A N/A 7.245±0.00 24.729±0.00 N/A N/A N/A N/A 5.470±1.84 N/A N/A N/A 1.061±0.00 N/A

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