C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005NU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141449-ENSG00000141446 CGP 9606 18:21242242-21600884
GeneTranscriptPositionBiotype
ENSG00000141446 (ESCO1)
establishment of sister chromatid cohesion N-acetyltransferase 1 		ENST00000269214 (ESCO1-001) 21529281-21600736 protein_coding
ENST00000383276 (ESCO1-002) 21529303-21600884 nonsense_mediated_decay
ENST00000580101 (ESCO1-003) 21593043-21600704 processed_transcript
ENST00000622333 (ESCO1-201) 21529310-21560981 protein_coding
ENSG00000141449 (GREB1L)
growth regulation by estrogen in breast cancer-like 		ENST00000269218 (GREB1L-010) 21242358-21522821 protein_coding
ENST00000424526 (GREB1L-201) 21242242-21522830 protein_coding
ENST00000578368 (GREB1L-001) 21366041-21468884 processed_transcript
ENST00000578383 (GREB1L-008) 21485369-21490231 retained_intron
ENST00000578955 (GREB1L-007) 21451099-21508715 retained_intron
ENST00000579454 (GREB1L-005) 21401226-21441407 protein_coding
ENST00000580384 (GREB1L-009) 21513903-21520739 protein_coding
ENST00000580683 (GREB1L-011) 21449741-21451370 retained_intron
ENST00000580732 (GREB1L-003) 21363593-21525417 protein_coding
ENST00000581327 (GREB1L-006) 21449635-21452433 protein_coding
ENST00000584446 (GREB1L-004) 21242242-21455130 retained_intron
ENSG00000265751 (RP11-296E23.1)
 ENST00000584611 (RP11-296E23.1-001) 21380286-21451017 antisense
ENSG00000265948 (RP11-296E23.2)
 ENST00000584331 (RP11-296E23.2-001) 21316878-21317795 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0005NU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042942-ENSMUSG00000024293 CGP 10090 18:10325177-10610352
GeneTranscriptPositionBiotype
ENSMUSG00000024293 (Esco1)
establishment of cohesion 1 homolog 1 (S. cerevisiae) 		ENSMUST00000025142 (Esco1-001) 10566619-10610352 protein_coding
ENSMUST00000097670 (Esco1-002) 10566611-10610129 protein_coding
ENSMUST00000115864 (Esco1-004) 10566619-10610109 protein_coding
ENSMUST00000127099 (Esco1-005) 10566602-10594055 processed_transcript
ENSMUST00000145320 (Esco1-003) 10566630-10610109 processed_transcript
ENSMUSG00000042942 (Greb1l)
growth regulation by estrogen in breast cancer-like 		ENSMUST00000048977 (Greb1l-001) 10325179-10562934 protein_coding
ENSMUST00000172532 (Greb1l-003) 10458225-10538289 protein_coding
ENSMUST00000172680 (Greb1l-004) 10510705-10553704 nonsense_mediated_decay
ENSMUST00000173261 (Greb1l-006) 10553786-10558837 processed_transcript
ENSMUST00000173356 (Greb1l-002) 10325177-10502412 retained_intron
ENSMUST00000174553 (Greb1l-005) 10509397-10515502 retained_intron
ENSMUSG00000084693 (Gm24894)
predicted gene, 24894 		ENSMUST00000122744 (Gm24894-201) 10551289-10551406 snoRNA
ENSMUSG00000094111 (Gm10349)
predicted gene 10349 		ENSMUST00000179225 (Gm10349-201) 10483083-10483466 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NU_0001ENSG00000141446ENST00000269214ENST00000383276ENST00000580101ENST00000622333ENSG00000141449ENST00000269218ENST00000424526ENST00000578368ENST00000578383ENST00000578955ENST00000579454ENST00000580384ENST00000580683ENST00000580732ENST00000581327ENST00000584446ENSG00000265751ENST00000584611ENSG00000265948ENST00000584331CIL_0005NU_0002ENSMUSG00000024293ENSMUST00000025142ENSMUST00000097670ENSMUST00000115864ENSMUST00000127099ENSMUST00000145320ENSMUSG00000042942ENSMUST00000048977ENSMUST00000172532ENSMUST00000172680ENSMUST00000173261ENSMUST00000173356ENSMUST00000174553ENSMUSG00000084693ENSMUST00000122744ENSMUSG00000094111ENSMUST00000179225
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NU_0001ENSG00000141446ENST00000269214ENST00000383276ENST00000580101ENST00000622333ENSG00000141449ENST00000269218ENST00000424526ENST00000578368ENST00000578955ENST00000580732ENST00000581327ENSG00000265751ENST00000584611ENSG00000265948ENST00000584331CIL_0005NU_0002ENSMUSG00000024293ENSMUST00000025142ENSMUST00000097670ENSMUST00000115864ENSMUST00000127099ENSMUST00000145320ENSMUSG00000042942ENSMUST00000048977ENSMUST00000172532ENSMUST00000172680ENSMUST00000173261ENSMUST00000174553ENSMUSG00000084693ENSMUST00000122744ENSMUSG00000094111ENSMUST00000179225
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141446 ENST00000269214 1.057±0.00 0.889±0.00 0.177±0.00 0.931±0.63 0.795±0.00 1.286±0.00 0.959±0.48 1.184±0.16 0.997±0.78 1.806±0.73 0.688±0.15 1.403±0.19 1.174±0.77 7.810±2.83
ENST00000383276 N/A N/A N/A 0.338±0.00 0.723±0.00 0.758±0.00 N/A N/A 0.287±0.00 N/A 0.482±0.00 0.424±0.15 0.287±0.00 2.988±0.00
ENST00000580101 N/A N/A 4.241±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622333 N/A 1.955±0.00 N/A 0.726±0.00 N/A 0.852±0.00 N/A 2.309±0.00 0.705±0.00 1.001±0.00 0.678±0.16 2.055±0.00 0.597±0.29 5.018±0.00
ENSG00000141449 ENST00000269218 N/A N/A N/A 0.365±0.00 N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000424526 N/A N/A N/A N/A 0.169±0.00 N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A 0.517±0.00
ENST00000578368 N/A N/A N/A 0.533±0.00 0.156±0.00 0.246±0.00 N/A N/A N/A N/A N/A 2.100±0.00 N/A N/A
ENST00000578383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578955 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 0.203±0.00 N/A N/A N/A
ENST00000579454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580732 N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A 0.142±0.00 N/A N/A 0.278±0.00
ENST00000581327 N/A N/A N/A N/A N/A 0.461±0.34 N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A
ENST00000584446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265751 ENST00000584611 N/A N/A N/A 0.017±0.00 0.563±0.00 N/A N/A N/A N/A N/A 1.897±0.70 N/A 0.025±0.00 0.469±0.00
ENSG00000265948 ENST00000584331 0.361±0.00 1.046±0.00 N/A 0.439±0.00 0.450±0.00 0.584±0.00 0.200±0.00 1.014±0.00 0.152±0.00 0.091±0.00 N/A 0.539±0.38 N/A 0.316±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024293 ENSMUST00000025142 0.741±0.19 0.928±0.06 2.064±0.26 1.540±0.47 0.912±0.36 0.576±0.14 0.445±0.13 0.486±0.07 1.324±0.72 0.991±0.11 0.879±0.19 1.405±0.86 4.605±1.16 1.182±0.42
ENSMUST00000097670 0.406±0.00 N/A 1.620±0.32 N/A N/A 0.965±0.00 0.520±0.25 0.660±0.21 0.892±0.61 0.436±0.00 0.797±0.20 N/A 2.212±0.18 N/A
ENSMUST00000115864 N/A N/A N/A N/A N/A N/A N/A N/A 1.004±0.39 N/A 0.597±0.22 0.956±0.00 2.853±0.48 N/A
ENSMUST00000127099 0.547±0.20 N/A 1.699±0.18 1.135±0.16 0.711±0.23 1.070±0.22 0.305±0.00 0.795±0.29 0.658±0.21 N/A 0.617±0.01 1.494±0.14 1.978±0.53 0.966±0.39
ENSMUST00000145320 0.598±0.21 N/A 1.233±0.00 0.907±0.23 0.464±0.00 1.177±0.52 0.512±0.00 0.637±0.09 0.874±0.32 0.611±0.08 0.783±0.18 N/A N/A 0.806±0.00
ENSMUSG00000042942 ENSMUST00000048977 0.626±0.51 3.053±0.67 0.225±0.08 1.116±0.92 0.104±0.07 0.286±0.04 0.087±0.05 1.251±0.17 0.374±0.36 0.150±0.01 0.031±0.01 7.529±2.95 0.781±0.83 0.360±0.15
ENSMUST00000172532 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000172680 0.318±0.16 4.041±1.27 N/A N/A 0.124±0.05 0.574±0.24 0.078±0.00 0.825±0.18 0.079±0.04 0.129±0.09 0.026±0.00 7.921±1.27 0.253±0.12 0.245±0.04
ENSMUST00000173261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.01 N/A N/A N/A
ENSMUST00000173356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A
ENSMUSG00000084693 ENSMUST00000122744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.229±10.21 N/A N/A
ENSMUSG00000094111 ENSMUST00000179225 N/A N/A 1.416±0.00 1.899±0.00 N/A N/A 0.138±0.00 N/A 2.951±0.75 N/A N/A N/A 0.023±0.00 N/A

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