C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: growth regulation by estrogen in breast cancer-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042942 Greb1l 10090 + 18:10325177-10562934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048977 Greb1l-001 10325179-10562934 protein_coding
  ENSMUST00000172532 Greb1l-003 10458225-10538289 protein_coding
  ENSMUST00000172680 Greb1l-004 10510705-10553704 nonsense_mediated_decay
  ENSMUST00000173261 Greb1l-006 10553786-10558837 processed_transcript
  ENSMUST00000173356 Greb1l-002 10325177-10502412 retained_intron
  ENSMUST00000174553 Greb1l-005 10509397-10515502 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048977ENSMUST00000172532ENSMUST00000172680ENSMUST00000173261ENSMUST00000174553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048977 0.626±0.51 3.053±0.67 0.225±0.08 1.116±0.92 0.104±0.07 0.286±0.04 0.087±0.05 1.251±0.17 0.374±0.36 0.150±0.01 0.031±0.01 7.529±2.95 0.781±0.83 0.360±0.15
ENSMUST00000172532 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000172680 0.318±0.16 4.041±1.27 N/A N/A 0.124±0.05 0.574±0.24 0.078±0.00 0.825±0.18 0.079±0.04 0.129±0.09 0.026±0.00 7.921±1.27 0.253±0.12 0.245±0.04
ENSMUST00000173261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.01 N/A N/A N/A
ENSMUST00000174553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O1 CIL_0005O1_0002 CGP 18:10064401-10562934
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000141449 GREB1L growth regulation by estrogen in breast cancer-like protein_coding Homo_sapiens

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