C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049206 Arhgef3-201 ENSMUSG00000021895 10090 + 14:27238039-27403904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049206 8.854±2.40 6.000±1.83 13.316±5.83 1.075±0.59 5.162±2.86 6.105±1.73 6.068±0.64 6.931±1.19 2.549±2.41 30.966±1.56 1.774±0.56 4.222±1.45 8.945±4.35 3.257±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UE CIL_0007UE_0002 VISTA 14:27067008-27667960
CIL_00002Z CIL_00002Z_0002 CGP 14:27238039-27483552

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296315 ARHGEF3-001 protein_coding Homo_sapiens 0 1864
ENST00000338458 ARHGEF3-002 protein_coding Homo_sapiens 0 1938
ENST00000413728 ARHGEF3-003 protein_coding Homo_sapiens 0 1866
ENST00000465659 ARHGEF3-004 nonsense_mediated_decay Homo_sapiens 0 1223
ENST00000468727 ARHGEF3-008 protein_coding Homo_sapiens 0 630
ENST00000473779 ARHGEF3-010 protein_coding Homo_sapiens 0 608
ENST00000481422 ARHGEF3-013 processed_transcript Homo_sapiens 0 551
ENST00000495373 ARHGEF3-006 protein_coding Homo_sapiens 0 1369
ENST00000496106 ARHGEF3-007 protein_coding Homo_sapiens 0 2015
ENST00000497267 ARHGEF3-005 protein_coding Homo_sapiens 0 1858

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