C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X linked-like-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049245 Rbmxl1-201 ENSMUSG00000037070 10090 - 8:78505271-78508928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049245 12.100±5.31 6.117±1.61 11.705±3.38 33.052±17.63 8.009±1.46 8.208±0.57 4.085±0.49 6.002±0.79 19.120±16.97 10.425±0.25 1.921±0.65 21.119±3.32 13.085±8.35 5.301±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K4 CIL_0007K4_0002 UCNEbase 8:78112601-78725703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0001047 IDA core promoter binding
GO:0003682 IDA chromatin binding
GO:0003723 ISS RNA binding
GO:0003729 ISS mRNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005719 ISS nuclear euchromatin
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0006509 ISS membrane protein ectodomain proteolysis
GO:0008380 IEA RNA splicing
GO:0044530 ISS supraspliceosomal complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0051260 ISS protein homooligomerization
GO:0070062 ISS extracellular vesicular exosome
GO:0071013 ISS catalytic step 2 spliceosome
GO:0071347 ISS cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320676 RBMX-001 protein_coding Homo_sapiens 0 1840
ENST00000321792 RBMXL1-001 protein_coding Homo_sapiens 0 1748
ENST00000399794 RBMXL1-201 protein_coding Homo_sapiens 0 1748
ENST00000408004 RBMXP1-001 processed_pseudogene Homo_sapiens 0 1208
ENST00000413769 RBMXL1-002 processed_transcript Homo_sapiens 0 606
ENST00000419968 RBMX-007 protein_coding Homo_sapiens 0 1131
ENST00000431446 RBMX-003 protein_coding Homo_sapiens 0 442
ENST00000434705 RBMXP2-001 processed_pseudogene Homo_sapiens 0 1430
ENST00000456392 RP6-159A1.2-001 processed_pseudogene Homo_sapiens 0 673
ENST00000464781 RBMX-002 nonsense_mediated_decay Homo_sapiens 0 1343
ENST00000507797 RBMXP4-001 processed_pseudogene Homo_sapiens 0 998
ENST00000528645 RP11-718B12.1-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000562646 RBMX-006 protein_coding Homo_sapiens 0 1131
ENST00000563370 RBMX-009 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000565438 RBMX-005 protein_coding Homo_sapiens 0 1406
ENST00000565907 RBMX-011 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000567262 RBMX-010 processed_transcript Homo_sapiens 0 333
ENST00000568578 RBMX-008 nonsense_mediated_decay Homo_sapiens 0 712

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