C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000320676 RBMX-001 ENSG00000147274 9606 - X:136873461-136880725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320676 21.195±0.00 22.708±0.00 7.608±0.00 13.477±3.35 9.539±1.73 20.718±9.06 10.633±3.86 8.734±3.72 16.525±8.27 20.633±0.00 22.706±15.13 30.934±23.62 33.571±14.93 13.312±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0002 CGP X:136665547-136880764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001047 IDA core promoter binding
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005719 IDA nuclear euchromatin
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006509 IDA membrane protein ectodomain proteolysis
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 NAS ribonucleoprotein complex
GO:0044530 IDA supraspliceosomal complex
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0051260 ISS protein homooligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071347 IDA cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114726 Rbmx-002 protein_coding Mus_musculus 0 2128
ENSMUST00000114730 Rbmx-005 protein_coding Mus_musculus 0 2128
ENSMUST00000049245 Rbmxl1-201 protein_coding Mus_musculus 0 1840
ENSMUST00000143310 Rbmx-003 protein_coding Mus_musculus 0 1604
ENSMUST00000094051 Gm7324-001 processed_pseudogene Mus_musculus 0 1581
ENSMUST00000140384 Rbmx-001 nonsense_mediated_decay Mus_musculus 0 1188
ENSMUST00000098470 Rbmx-004 protein_coding Mus_musculus 0 1186
ENSMUST00000133346 Rbmx-006 protein_coding Mus_musculus 0 429

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