C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAFB-like, transcription modulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049263 Sltm-201 ENSMUSG00000032212 10090 + 9:70542920-70592237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049263 2.243±1.05 1.496±0.20 5.493±0.87 25.710±21.44 2.062±0.75 2.723±1.36 1.175±0.32 2.418±1.05 6.831±5.92 2.471±1.25 3.848±1.26 10.509±12.16 13.816±6.49 138.039±185.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0002 CGP 9:70425429-70592237
CIL_0008MN CIL_0008MN_0002 VISTA 9:70534536-71135234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123464 sltm-202 protein_coding Danio_rerio 0 228
ENSDART00000139546 sltm-006 protein_coding Danio_rerio 0 228
ENSDART00000142818 sltm-001 protein_coding Danio_rerio 0 228
ENSDART00000142723 sltm-005 retained_intron Danio_rerio 1e-31 143
ENSDART00000142480 sltm-002 processed_transcript Danio_rerio 3e-23 115
ENST00000249736 SLTM-014 protein_coding Homo_sapiens 0 1210
ENST00000380516 SLTM-001 protein_coding Homo_sapiens 0 4314
ENST00000432750 SLTM-009 protein_coding Homo_sapiens 0 2006
ENST00000473359 SLTM-010 retained_intron Homo_sapiens 0 366
ENST00000474342 SLTM-006 retained_intron Homo_sapiens 0 316
ENST00000480144 SLTM-007 retained_intron Homo_sapiens 0 701
ENST00000484498 SLTM-004 retained_intron Homo_sapiens 0 418
ENST00000492526 SLTM-002 nonsense_mediated_decay Homo_sapiens 0 2723
ENST00000493062 SLTM-008 retained_intron Homo_sapiens 0 791
ENST00000497088 SLTM-005 retained_intron Homo_sapiens 0 640
ENST00000557924 SLTM-011 nonsense_mediated_decay Homo_sapiens 0 2573
ENST00000557950 SLTM-018 processed_transcript Homo_sapiens 0 782
ENST00000558052 SLTM-023 retained_intron Homo_sapiens 0 603
ENST00000558486 SLTM-017 protein_coding Homo_sapiens 0 462
ENST00000558734 SLTM-024 retained_intron Homo_sapiens 0 243
ENST00000558756 SLTM-019 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000559261 SLTM-013 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000559305 SLTM-016 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000559880 SLTM-012 protein_coding Homo_sapiens 0 798
ENST00000560012 SLTM-003 processed_transcript Homo_sapiens 0 418
ENST00000560494 SLTM-025 protein_coding Homo_sapiens 0 267
ENST00000560532 SLTM-020 retained_intron Homo_sapiens 2e-28 130
ENST00000560682 SLTM-015 protein_coding Homo_sapiens 0 420
ENST00000560695 SLTM-022 retained_intron Homo_sapiens 0 361

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