C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin binding LIM protein family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309868 ABLIM3-001 ENSG00000173210 9606 + 5:149141503-149260439 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000309868
Transcript ID Brain Muscle
ENST00000309868 1.703±0.20 11.177±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GC CIL_0001GC_0002 CGP 5:148923639-149260542
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0007411 TAS axon guidance
GO:0008270 IEA zinc ion binding
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166783 Ablim3-202 protein_coding Mus_musculus 0 3493
ENSMUST00000049378 Ablim3-201 protein_coding Mus_musculus 0 3378

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