C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin binding LIM protein family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515171 ABLIM3-003 ENSG00000173210 9606 + 5:149141751-149260439 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLiverOvaryPlacentaTestisENST00000515171
Transcript ID Adipose Colon Heart Liver Ovary Placenta Testis
ENST00000515171 20.582±0.00 3.721±3.60 1.031±0.00 12.477±0.00 2.110±0.00 7.047±2.58 0.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GC CIL_0001GC_0002 CGP 5:148923639-149260542
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030036 IEA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166783 Ablim3-202 protein_coding Mus_musculus 0 1437
ENSMUST00000049378 Ablim3-201 protein_coding Mus_musculus 0 1437

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