C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CLIP associating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049404 Clasp1-201 ENSMUSG00000064302 10090 + 1:118389058-118609432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSMUST00000049404
Transcript ID Brain Liver
ENSMUST00000049404 9.568±2.35 0.223±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VI CIL_0001VI_0002 CGP 1:118321839-118612678
CIL_0001QO CIL_0001QO_0002 CGP 1:118389058-118685168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0005828 IEA kinetochore microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0007020 ISS microtubule nucleation
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007067 IEA mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0031023 ISS microtubule organizing center organization
GO:0034453 ISS microtubule anchoring
GO:0043515 IEA kinetochore binding
GO:0051010 IEA microtubule plus-end binding
GO:0051294 ISO establishment of spindle orientation
GO:0051301 ISO cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263710 CLASP1-201 protein_coding Homo_sapiens 0 6473
ENST00000397587 CLASP1-202 protein_coding Homo_sapiens 0 3169
ENST00000409078 CLASP1-001 protein_coding Homo_sapiens 0 3275
ENST00000418989 CLASP1-012 protein_coding Homo_sapiens 0 617
ENST00000430234 CLASP1-014 processed_transcript Homo_sapiens 0 675
ENST00000452274 CLASP1-016 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000455322 CLASP1-203 protein_coding Homo_sapiens 0 3099
ENST00000463621 CLASP1-003 retained_intron Homo_sapiens 0 375
ENST00000472776 CLASP1-004 retained_intron Homo_sapiens 0 654
ENST00000474065 CLASP1-010 retained_intron Homo_sapiens 0 562
ENST00000485112 CLASP1-009 retained_intron Homo_sapiens 0 612
ENST00000491646 CLASP1-015 retained_intron Homo_sapiens 0 342
ENST00000541377 CLASP1-204 protein_coding Homo_sapiens 0 2972

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