C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: INO80 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049920 Ino80-001 ENSMUSG00000034154 10090 - 2:119373042-119477687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049920 1.747±0.46 3.688±0.73 2.701±0.00 2.909±0.54 1.058±0.28 1.598±0.41 0.589±0.02 1.602±0.56 1.200±0.89 1.981±0.41 2.575±0.69 3.595±2.08 3.688±2.44 1.186±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IM CIL_0005IM_0003 CGP 2:119351229-119477687
CIL_000798 CIL_000798_0002 CGP 2:119373042-119547627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000070 IEA mitotic sister chromatid segregation
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0003677 ISS DNA binding
GO:0003678 ISS DNA helicase activity
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005874 IEA microtubule
GO:0006200 IEA ATP catabolic process
GO:0006302 IEA double-strand break repair
GO:0006338 ISS chromatin remodeling
GO:0010571 IEA positive regulation of nuclear cell cycle DNA replication
GO:0016887 ISS ATPase activity
GO:0030307 IEA positive regulation of cell growth
GO:0031011 IEA Ino80 complex
GO:0032508 IEA DNA duplex unwinding
GO:0034644 IEA cellular response to UV
GO:0043014 IEA alpha-tubulin binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051225 IEA spindle assembly
GO:0070914 IEA UV-damage excision repair
GO:0071479 IEA cellular response to ionizing radiation
GO:2000045 IEA regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361937 INO80-001 protein_coding Homo_sapiens 0 6859
ENST00000401393 INO80-201 protein_coding Homo_sapiens 0 6623
ENST00000557849 INO80-006 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000558270 INO80-010 retained_intron Homo_sapiens 0 704
ENST00000558357 INO80-002 nonsense_mediated_decay Homo_sapiens 0 4580
ENST00000559995 INO80-005 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000560689 INO80-009 retained_intron Homo_sapiens 0 684
ENST00000560799 INO80-008 retained_intron Homo_sapiens 0 604
ENST00000561172 INO80-004 retained_intron Homo_sapiens 0 484
ENST00000561244 INO80-007 processed_transcript Homo_sapiens 0 579
ENST00000616814 INO80-202 protein_coding Homo_sapiens 0 4580

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