C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000798_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128908-ENSG00000178997 CGP 9606 15:40978880-41230743
GeneTranscriptPositionBiotype
ENSG00000128908 (INO80)
INO80 complex subunit 		ENST00000361937 (INO80-001) 40978880-41116354 protein_coding
ENST00000401393 (INO80-201) 40978893-41116153 protein_coding
ENST00000557849 (INO80-006) 40997577-41027599 nonsense_mediated_decay
ENST00000558270 (INO80-010) 40979911-40983219 retained_intron
ENST00000558357 (INO80-002) 40979466-41116132 nonsense_mediated_decay
ENST00000559995 (INO80-005) 41049939-41069622 nonsense_mediated_decay
ENST00000560689 (INO80-009) 40980302-40983986 retained_intron
ENST00000560799 (INO80-008) 40984344-40997710 retained_intron
ENST00000561172 (INO80-004) 41069512-41072015 retained_intron
ENST00000561244 (INO80-007) 40985349-41005357 processed_transcript
ENST00000616814 (INO80-202) 40980223-41116132 protein_coding
ENSG00000157021 (FAM92A1P1)
family with sequence similarity 92, member A1 pseudogene 1 		ENST00000528023 (FAM92A1P1-001) 41163162-41164374 unprocessed_pseudogene
ENSG00000240847 (RN7SL497P)
RNA, 7SL, cytoplasmic 497, pseudogene 		ENST00000476341 (RN7SL497P-201) 41191965-41192265 misc_RNA
ENSG00000259547 (CYCSP2)
cytochrome c, somatic pseudogene 2 		ENST00000558168 (CYCSP2-001) 41108878-41109178 processed_pseudogene
ENSG00000259617 (RP11-540O11.6)
 ENST00000561388 (RP11-540O11.6-001) 40999274-41004865 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000798_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034154-ENSMUSG00000048647 CGP 10090 2:119373042-119547627
GeneTranscriptPositionBiotype
ENSMUSG00000034154 (Ino80)
INO80 homolog (S. cerevisiae) 		ENSMUST00000049920 (Ino80-001) 119373042-119477687 protein_coding
ENSMUST00000110808 (Ino80-002) 119402709-119477613 protein_coding
ENSMUST00000138707 (Ino80-003) 119433294-119439680 retained_intron
ENSMUSG00000048647 (Exd1)
exonuclease 3'-5' domain containing 1 		ENSMUST00000060009 (Exd1-001) 119516505-119547627 protein_coding
ENSMUST00000133668 (Exd1-002) 119538837-119547194 protein_coding
ENSMUST00000171024 (Exd1-201) 119516511-119541513 protein_coding
ENSMUSG00000082369 (Gm14208)
predicted gene 14208 		ENSMUST00000119645 (Gm14208-001) 119508552-119509229 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000798_0001ENSG00000128908ENST00000361937ENST00000401393ENST00000557849ENST00000558270ENST00000558357ENST00000559995ENST00000560689ENST00000560799ENST00000561172ENST00000561244ENST00000616814ENSG00000157021ENST00000528023ENSG00000240847ENST00000476341ENSG00000259547ENST00000558168ENSG00000259617ENST00000561388CIL_000798_0002ENSMUSG00000034154ENSMUST00000049920ENSMUST00000110808ENSMUST00000138707ENSMUSG00000048647ENSMUST00000060009ENSMUST00000133668ENSMUST00000171024ENSMUSG00000082369ENSMUST00000119645
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000798_0001ENSG00000128908ENST00000361937ENST00000401393ENST00000558357ENST00000560799ENST00000616814ENSG00000157021ENST00000528023ENSG00000240847ENST00000476341ENSG00000259547ENST00000558168ENSG00000259617ENST00000561388CIL_000798_0002ENSMUSG00000034154ENSMUST00000049920ENSMUSG00000048647ENSMUST00000060009ENSMUST00000133668ENSMUST00000171024ENSMUSG00000082369ENSMUST00000119645
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128908 ENST00000361937 2.380±0.00 0.998±0.00 N/A 1.108±0.37 2.162±0.99 1.730±0.31 1.737±1.16 N/A N/A 1.292±0.00 4.695±0.00 2.321±1.26 1.472±0.26 2.291±0.13
ENST00000401393 N/A N/A N/A 0.735±0.02 N/A N/A N/A 0.863±0.00 1.079±0.00 0.887±0.27 N/A 0.969±0.00 0.692±0.00 N/A
ENST00000557849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558357 0.912±0.00 1.629±0.00 N/A 0.636±0.00 1.009±0.00 N/A N/A 0.961±0.00 N/A N/A 0.356±0.00 0.669±0.00 N/A N/A
ENST00000559995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.577±0.00 6.152±0.00 15.437±0.00
ENST00000561172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616814 N/A N/A 0.574±0.00 N/A N/A N/A N/A 1.719±0.00 N/A 3.004±0.00 N/A N/A N/A N/A
ENSG00000157021 ENST00000528023 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A 0.012±0.00 0.015±0.00 N/A 0.054±0.00
ENSG00000240847 ENST00000476341 N/A 0.125±0.00 N/A 0.069±0.00 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.158±0.87
ENSG00000259547 ENST00000558168 N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.096±0.00
ENSG00000259617 ENST00000561388 0.024±0.00 0.168±0.00 0.599±0.00 0.024±0.00 N/A N/A 0.045±0.00 N/A 0.042±0.00 0.846±0.61 N/A 1.281±0.00 N/A 0.040±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034154 ENSMUST00000049920 1.747±0.46 3.688±0.73 2.701±0.00 2.909±0.54 1.058±0.28 1.598±0.41 0.589±0.02 1.602±0.56 1.200±0.89 1.981±0.41 2.575±0.69 3.595±2.08 3.688±2.44 1.186±0.37
ENSMUST00000110808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048647 ENSMUST00000060009 0.331±0.03 0.148±0.02 0.306±0.00 0.098±0.02 0.145±0.03 0.109±0.07 N/A 0.092±0.04 0.111±0.05 0.144±0.04 0.171±0.10 0.187±0.08 0.133±0.05 1.761±0.82
ENSMUST00000133668 N/A N/A N/A 2.234±0.00 N/A N/A N/A 0.376±0.00 N/A N/A N/A 1.231±0.71 3.253±0.64 54.649±0.00
ENSMUST00000171024 0.664±0.31 0.244±0.14 0.591±0.00 0.085±0.03 0.815±0.19 0.287±0.15 0.109±0.03 0.178±0.01 0.273±0.24 0.207±0.07 0.212±0.11 0.285±0.16 0.203±0.06 0.621±0.18
ENSMUSG00000082369 ENSMUST00000119645 N/A N/A 0.030±0.00 0.083±0.06 N/A 0.115±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.093±0.00 N/A

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