C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: INO80 complex subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361937 INO80-001 ENSG00000128908 9606 - 15:40978880-41116354 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000361937
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000361937 2.380±0.00 0.998±0.00 1.108±0.37 2.162±0.99 1.730±0.31 1.737±1.16 1.292±0.00 4.695±0.00 2.321±1.26 1.472±0.26 2.291±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IM CIL_0005IM_0002 CGP 15:40952962-41116354
CIL_000798 CIL_000798_0001 CGP 15:40978880-41230743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000070 IMP mitotic sister chromatid segregation
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003677 IDA:IEA DNA binding
GO:0003678 IDA DNA helicase activity
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005874 IEA microtubule
GO:0006200 IDA ATP catabolic process
GO:0006302 IMP double-strand break repair
GO:0006338 IDA chromatin remodeling
GO:0010571 IMP positive regulation of nuclear cell cycle DNA replication
GO:0016887 IDA ATPase activity
GO:0030307 IMP positive regulation of cell growth
GO:0031011 IDA Ino80 complex
GO:0032508 IDA DNA duplex unwinding
GO:0034644 IMP cellular response to UV
GO:0043014 IMP alpha-tubulin binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051225 IMP spindle assembly
GO:0070914 IMP UV-damage excision repair
GO:0071479 IMP cellular response to ionizing radiation
GO:2000045 IMP regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049920 Ino80-001 protein_coding Mus_musculus 0 6859
ENSMUST00000110808 Ino80-002 protein_coding Mus_musculus 0 4920
ENSMUST00000138707 Ino80-003 retained_intron Mus_musculus 0 296

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