C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070426-ENSDARG00000070432 CGP 7955 20:28296499-28381985
GeneTranscriptPositionBiotype
ENSDARG00000070426 (chac1)
ChaC, cation transport regulator-like 1 		ENSDART00000103330 (chac1-001) 28296499-28299069 protein_coding
ENSDART00000153319 (chac1-002) 28296552-28297468 retained_intron
ENSDARG00000070432 (ino80)
INO80 homolog (S. cerevisiae) 		ENSDART00000103336 (ino80-201) 28300286-28378717 protein_coding
ENSDART00000127757 (ino80-202) 28371131-28381985 protein_coding
ENSDART00000128806 (ino80-001) 28299210-28381959 protein_coding
ENSDART00000153113 (ino80-002) 28314387-28324711 retained_intron
CIL_0005IM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128965-ENSG00000128908 CGP 9606 15:40952962-41116354
GeneTranscriptPositionBiotype
ENSG00000128908 (INO80)
INO80 complex subunit 		ENST00000361937 (INO80-001) 40978880-41116354 protein_coding
ENST00000401393 (INO80-201) 40978893-41116153 protein_coding
ENST00000557849 (INO80-006) 40997577-41027599 nonsense_mediated_decay
ENST00000558270 (INO80-010) 40979911-40983219 retained_intron
ENST00000558357 (INO80-002) 40979466-41116132 nonsense_mediated_decay
ENST00000559995 (INO80-005) 41049939-41069622 nonsense_mediated_decay
ENST00000560689 (INO80-009) 40980302-40983986 retained_intron
ENST00000560799 (INO80-008) 40984344-40997710 retained_intron
ENST00000561172 (INO80-004) 41069512-41072015 retained_intron
ENST00000561244 (INO80-007) 40985349-41005357 processed_transcript
ENST00000616814 (INO80-202) 40980223-41116132 protein_coding
ENSG00000128965 (CHAC1)
ChaC, cation transport regulator homolog 1 (E. coli) 		ENST00000444189 (CHAC1-003) 40952962-40955822 protein_coding
ENST00000446533 (CHAC1-001) 40953149-40956519 protein_coding
ENST00000487220 (CHAC1-002) 40954206-40956167 protein_coding
ENST00000617768 (CHAC1-201) 40953438-40956519 protein_coding
ENST00000617961 (CHAC1-004) 40953493-40956512 protein_coding
ENSG00000259547 (CYCSP2)
cytochrome c, somatic pseudogene 2 		ENST00000558168 (CYCSP2-001) 41108878-41109178 processed_pseudogene
ENSG00000259617 (RP11-540O11.6)
 ENST00000561388 (RP11-540O11.6-001) 40999274-41004865 antisense
CIL_0005IM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027313-ENSMUSG00000034154 CGP 10090 2:119351229-119477687
GeneTranscriptPositionBiotype
ENSMUSG00000027313 (Chac1)
ChaC, cation transport regulator 1 		ENSMUST00000028780 (Chac1-001) 119351229-119354381 protein_coding
ENSMUSG00000034154 (Ino80)
INO80 homolog (S. cerevisiae) 		ENSMUST00000049920 (Ino80-001) 119373042-119477687 protein_coding
ENSMUST00000110808 (Ino80-002) 119402709-119477613 protein_coding
ENSMUST00000138707 (Ino80-003) 119433294-119439680 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IM_0001ENSDARG00000070426ENSDART00000103330ENSDART00000153319ENSDARG00000070432ENSDART00000103336ENSDART00000127757ENSDART00000128806ENSDART00000153113CIL_0005IM_0002ENSG00000128908ENST00000361937ENST00000401393ENST00000557849ENST00000558270ENST00000558357ENST00000559995ENST00000560689ENST00000560799ENST00000561172ENST00000561244ENST00000616814ENSG00000128965ENST00000444189ENST00000446533ENST00000487220ENST00000617768ENST00000617961ENSG00000259547ENST00000558168ENSG00000259617ENST00000561388CIL_0005IM_0003ENSMUSG00000027313ENSMUST00000028780ENSMUSG00000034154ENSMUST00000049920ENSMUST00000110808ENSMUST00000138707
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IM_0001ENSDARG00000070426ENSDART00000103330ENSDART00000153319ENSDARG00000070432ENSDART00000103336ENSDART00000128806CIL_0005IM_0002ENSG00000128908ENST00000361937ENST00000401393ENST00000558357ENST00000560799ENST00000616814ENSG00000128965ENST00000444189ENST00000446533ENST00000487220ENST00000617768ENST00000617961ENSG00000259547ENST00000558168ENSG00000259617ENST00000561388CIL_0005IM_0003ENSMUSG00000027313ENSMUST00000028780ENSMUSG00000034154ENSMUST00000049920
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070426 ENSDART00000103330 N/A N/A N/A 205.379±46.75 N/A N/A 867.906±671.15 227.430±90.32 352.390±0.00 N/A 1048.460±0.00 N/A N/A N/A
ENSDART00000153319 N/A N/A N/A 95.606±0.00 N/A N/A 327.349±0.00 101.794±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000070432 ENSDART00000103336 N/A N/A N/A N/A N/A N/A N/A 0.828±0.00 N/A N/A 0.337±0.00 N/A N/A N/A
ENSDART00000127757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000128806 N/A N/A N/A 2.477±1.30 N/A N/A 3.977±2.12 2.780±0.77 0.390±0.00 N/A 0.910±0.00 N/A N/A N/A
ENSDART00000153113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128908 ENST00000361937 2.380±0.00 0.998±0.00 N/A 1.108±0.37 2.162±0.99 1.730±0.31 1.737±1.16 N/A N/A 1.292±0.00 4.695±0.00 2.321±1.26 1.472±0.26 2.291±0.13
ENST00000401393 N/A N/A N/A 0.735±0.02 N/A N/A N/A 0.863±0.00 1.079±0.00 0.887±0.27 N/A 0.969±0.00 0.692±0.00 N/A
ENST00000557849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558357 0.912±0.00 1.629±0.00 N/A 0.636±0.00 1.009±0.00 N/A N/A 0.961±0.00 N/A N/A 0.356±0.00 0.669±0.00 N/A N/A
ENST00000559995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.577±0.00 6.152±0.00 15.437±0.00
ENST00000561172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616814 N/A N/A 0.574±0.00 N/A N/A N/A N/A 1.719±0.00 N/A 3.004±0.00 N/A N/A N/A N/A
ENSG00000128965 ENST00000444189 N/A N/A N/A N/A 0.113±0.00 N/A 0.038±0.00 0.075±0.00 0.051±0.00 N/A N/A N/A N/A N/A
ENST00000446533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A
ENST00000487220 N/A 0.246±0.00 N/A N/A 0.470±0.14 N/A 0.239±0.00 N/A N/A N/A N/A 0.995±0.00 0.575±0.00 N/A
ENST00000617768 N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.440±1.57 N/A 0.798±0.00
ENST00000617961 0.348±0.00 N/A N/A 3.545±0.00 N/A 0.378±0.08 0.604±0.00 3.229±0.00 0.169±0.00 1.553±1.34 10.411±6.66 9.243±9.58 0.574±0.29 0.557±0.22
ENSG00000259547 ENST00000558168 N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.096±0.00
ENSG00000259617 ENST00000561388 0.024±0.00 0.168±0.00 0.599±0.00 0.024±0.00 N/A N/A 0.045±0.00 N/A 0.042±0.00 0.846±0.61 N/A 1.281±0.00 N/A 0.040±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027313 ENSMUST00000028780 3.385±1.53 7.631±1.55 0.650±0.08 2.076±0.08 6.371±4.85 1.734±0.27 2.367±0.66 0.813±0.09 1.485±0.80 4.335±0.15 30.118±13.00 2.198±1.39 0.526±0.35 0.182±0.00
ENSMUSG00000034154 ENSMUST00000049920 1.747±0.46 3.688±0.73 2.701±0.00 2.909±0.54 1.058±0.28 1.598±0.41 0.589±0.02 1.602±0.56 1.200±0.89 1.981±0.41 2.575±0.69 3.595±2.08 3.688±2.44 1.186±0.37
ENSMUST00000110808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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