C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: villin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051386 Vill-001 ENSMUSG00000038775 10090 + 9:119052778-119071519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051386 3.390±0.98 0.158±0.06 6.220±0.12 0.176±0.01 5.941±2.40 2.203±0.31 0.260±0.18 7.890±3.16 0.987±0.78 2.460±0.41 0.097±0.00 3.243±1.54 2.865±1.93 1.075±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CZ CIL_0008CZ_0002 VISTA 9:118558597-119161666
CIL_00099X CIL_00099X_0002 VISTA 9:118563323-119168147
CIL_0005AN CIL_0005AN_0002 CGP 9:118926453-119071525
CIL_0005A4 CIL_0005A4_0002 CGP 9:119052778-119093496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005575 ND cellular_component
GO:0007010 IEA cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283713 VILL-001 protein_coding Homo_sapiens 0 1916
ENST00000383759 VILL-201 protein_coding Homo_sapiens 0 1916
ENST00000412008 VILL-009 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000463080 VILL-010 retained_intron Homo_sapiens 0 599
ENST00000465644 VILL-002 protein_coding Homo_sapiens 0 1225
ENST00000484717 VILL-004 retained_intron Homo_sapiens 0 1011
ENST00000486616 VILL-005 retained_intron Homo_sapiens 0 350
ENST00000488209 VILL-011 retained_intron Homo_sapiens 0 337
ENST00000492491 VILL-007 protein_coding Homo_sapiens 0 401

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