C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: makorin, ring finger protein, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051671 Mkrn1-005 ENSMUSG00000029922 10090 - 6:39400760-39420358 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000051671
Transcript ID Adipose Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000051671 3.571±0.00 4.951±0.00 2.420±0.11 20.030±1.57 1.081±0.19 8.569±0.06 9.689±2.71 46.764±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0002 VISTA 6:38939568-39543498
CIL_000305 CIL_000305_0002 CGP 6:39381175-39420462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255977 MKRN1-001 protein_coding Homo_sapiens 0 1439
ENST00000443720 MKRN1-002 protein_coding Homo_sapiens 0 1982
ENST00000444706 MKRN4P-001 processed_pseudogene Homo_sapiens 0 983
ENST00000445263 MKRN5P-001 processed_pseudogene Homo_sapiens 0 885
ENST00000445872 RP11-535M15.2-001 transcribed_processed_pseudogene Homo_sapiens 0 859
ENST00000467513 MKRN1-013 protein_coding Homo_sapiens 0 617
ENST00000468447 MKRN1-017 retained_intron Homo_sapiens 0 346
ENST00000471104 MKRN1-011 protein_coding Homo_sapiens 0 715
ENST00000474576 MKRN1-007 protein_coding Homo_sapiens 0 1061
ENST00000475010 MKRN1-006 retained_intron Homo_sapiens 0 1312
ENST00000480552 MKRN1-015 protein_coding Homo_sapiens 0 889
ENST00000481705 MKRN1-009 processed_transcript Homo_sapiens 0 551
ENST00000494939 MKRN1-014 protein_coding Homo_sapiens 0 510
ENST00000495305 MKRN1-003 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000496169 MKRN1-005 nonsense_mediated_decay Homo_sapiens 0 1607
ENST00000498535 MKRN1-010 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000546624 MKRN9P-001 transcribed_processed_pseudogene Homo_sapiens 0 1018

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