C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trimethylguanosine synthase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052712 Tgs1-001 ENSMUSG00000028233 10090 + 4:3574875-3616619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052712 2.005±0.60 1.203±0.33 3.830±0.45 9.415±4.90 1.595±0.46 1.023±0.44 0.949±0.20 1.034±0.28 3.975±3.18 2.306±0.76 1.680±0.17 2.432±1.98 6.930±3.15 0.735±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QG CIL_0003QG_0002 CGP 4:3549041-3616619
CIL_00009D CIL_00009D_0002 CGP 4:3574875-3813122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0005634 ISA nucleus
GO:0005737 ISA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0009452 IEA 7-methylguanosine RNA capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260129 TGS1-001 protein_coding Homo_sapiens 0 2061
ENST00000519494 TGS1-003 retained_intron Homo_sapiens 0 340
ENST00000523948 TGS1-002 nonsense_mediated_decay Homo_sapiens 0 1349

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