C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NIMA (never in mitosis gene a)-related expressed kinase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054234 Nek6-001 ENSMUSG00000026749 10090 + 2:38511643-38588041 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000054234
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000054234 11.367±2.87 15.826±2.49 9.974±1.25 12.428±6.16 36.551±3.89 4.805±1.70 16.747±4.69 11.341±3.96 41.285±15.65 18.794±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MV CIL_0007MV_0002 UCNEbase 2:38111928-38614796
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_0006WH CIL_0006WH_0002 CGP 2:38339281-38588041
CIL_0006WG CIL_0006WG_0002 CGP 2:38511643-38644087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0004672 IEA protein kinase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005524 IEA:ISS ATP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006468 ISS protein phosphorylation
GO:0006915 IEA apoptotic process
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007165 IEA signal transduction
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0019894 IEA kinesin binding
GO:0019901 ISS protein kinase binding
GO:0030071 ISS regulation of mitotic metaphase/anaphase transition
GO:0031572 ISS G2 DNA damage checkpoint
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046777 ISS protein autophosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320246 NEK6-002 protein_coding Homo_sapiens 0 1212
ENST00000373596 NEK6-007 protein_coding Homo_sapiens 0 822
ENST00000373600 NEK6-003 protein_coding Homo_sapiens 0 1203
ENST00000373603 NEK6-004 protein_coding Homo_sapiens 0 1206
ENST00000394199 NEK6-201 protein_coding Homo_sapiens 0 1203
ENST00000422297 NEK6-001 protein_coding Homo_sapiens 0 865
ENST00000423785 NEK6-009 protein_coding Homo_sapiens 0 645
ENST00000425237 NEK6-008 protein_coding Homo_sapiens 0 874
ENST00000444973 NEK6-005 protein_coding Homo_sapiens 0 863
ENST00000447379 NEK6-010 protein_coding Homo_sapiens 0 684
ENST00000454453 NEK6-006 protein_coding Homo_sapiens 0 684
ENST00000539416 NEK6-202 protein_coding Homo_sapiens 0 1203
ENST00000540326 NEK6-203 protein_coding Homo_sapiens 0 1206
ENST00000545174 NEK6-204 protein_coding Homo_sapiens 0 1203
ENST00000546191 NEK6-205 protein_coding Homo_sapiens 0 1203

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