C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006WH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106689-ENSG00000119408 CGP 9606 9:124001670-124353307
GeneTranscriptPositionBiotype
ENSG00000106689 (LHX2)
LIM homeobox 2 		ENST00000373615 (LHX2-001) 124011610-124033301 protein_coding
ENST00000446480 (LHX2-002) 124012357-124032884 protein_coding
ENST00000488674 (LHX2-003) 124015397-124033301 protein_coding
ENST00000560961 (LHX2-004) 124001670-124015361 protein_coding
ENSG00000119408 (NEK6)
NIMA-related kinase 6 		ENST00000320246 (NEK6-002) 124257970-124353307 protein_coding
ENST00000373596 (NEK6-007) 124261473-124327445 protein_coding
ENST00000373600 (NEK6-003) 124257963-124353307 protein_coding
ENST00000373603 (NEK6-004) 124257606-124353307 protein_coding
ENST00000394199 (NEK6-201) 124292941-124352438 protein_coding
ENST00000422297 (NEK6-001) 124291979-124339608 protein_coding
ENST00000423785 (NEK6-009) 124286440-124326405 protein_coding
ENST00000425237 (NEK6-008) 124261473-124339614 protein_coding
ENST00000444973 (NEK6-005) 124258260-124339607 protein_coding
ENST00000447379 (NEK6-010) 124299985-124326438 protein_coding
ENST00000454453 (NEK6-006) 124258261-124347797 protein_coding
ENST00000539416 (NEK6-202) 124292420-124352438 protein_coding
ENST00000540326 (NEK6-203) 124257606-124352438 protein_coding
ENST00000545174 (NEK6-204) 124258251-124352438 protein_coding
ENST00000546191 (NEK6-205) 124291971-124352438 protein_coding
ENSG00000227200 (RP11-121A14.3)
 ENST00000437461 (RP11-121A14.3-001) 124262876-124265809 sense_intronic
ENSG00000231227 (RP11-85O21.4)
 ENST00000421041 (RP11-85O21.4-001) 124010530-124011114 sense_overlapping
ENSG00000234921 (RP11-85O21.5)
 ENST00000429482 (RP11-85O21.5-001) 124031624-124032524 antisense
ENSG00000235204 (RP11-121A14.2)
 ENST00000426157 (RP11-121A14.2-001) 124259250-124261156 antisense
ENSG00000236668 (RP11-85O21.2)
 ENST00000453529 (RP11-85O21.2-001) 124006277-124009396 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006WH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000247-ENSMUSG00000026749 CGP 10090 2:38339281-38588041
GeneTranscriptPositionBiotype
ENSMUSG00000000247 (Lhx2)
LIM homeobox protein 2 		ENSMUST00000000253 (Lhx2-001) 38350759-38369733 protein_coding
ENSMUST00000133661 (Lhx2-005) 38341092-38354825 protein_coding
ENSMUST00000143783 (Lhx2-003) 38339281-38369199 protein_coding
ENSMUST00000149664 (Lhx2-004) 38339488-38353693 retained_intron
ENSMUST00000155964 (Lhx2-002) 38352532-38354573 protein_coding
ENSMUST00000175896 (Lhx2-006) 38353802-38360089 retained_intron
ENSMUST00000176229 (Lhx2-007) 38351768-38354631 nonsense_mediated_decay
ENSMUSG00000026749 (Nek6)
NIMA (never in mitosis gene a)-related expressed kinase 6 		ENSMUST00000054234 (Nek6-001) 38511643-38588041 protein_coding
ENSMUST00000112895 (Nek6-003) 38511814-38585766 protein_coding
ENSMUST00000112902 (Nek6-002) 38511668-38587480 protein_coding
ENSMUST00000151683 (Nek6-004) 38514581-38557849 protein_coding
ENSMUST00000156726 (Nek6-005) 38514626-38560910 protein_coding
ENSMUSG00000026750 (Psmb7)
proteasome (prosome, macropain) subunit, beta type 7 		ENSMUST00000028083 (Psmb7-001) 38588036-38644087 protein_coding
ENSMUST00000151981 (Psmb7-002) 38613378-38643889 processed_transcript
ENSMUSG00000084124 (Gm13588)
predicted gene 13588 		ENSMUST00000120026 (Gm13588-001) 38490104-38490238 processed_pseudogene
ENSMUSG00000085950 (Gm13589)
predicted gene 13589 		ENSMUST00000146404 (Gm13589-001) 38424002-38455851 lincRNA
ENSMUSG00000087539 (Gm13584)
predicted gene 13584 		ENSMUST00000137134 (Gm13584-001) 38359580-38363980 antisense
ENSMUSG00000098383 (Gm27197)
predicted gene 27197 		ENSMUST00000184325 (Gm27197-001) 38347357-38348316 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WH_0001ENSG00000106689ENST00000373615ENST00000446480ENST00000488674ENST00000560961ENSG00000119408ENST00000320246ENST00000373596ENST00000373600ENST00000373603ENST00000394199ENST00000422297ENST00000423785ENST00000425237ENST00000444973ENST00000447379ENST00000454453ENST00000539416ENST00000540326ENST00000545174ENST00000546191ENSG00000227200ENST00000437461ENSG00000231227ENST00000421041ENSG00000234921ENST00000429482ENSG00000235204ENST00000426157ENSG00000236668ENST00000453529CIL_0006WH_0002ENSMUSG00000000247ENSMUST00000000253ENSMUST00000133661ENSMUST00000143783ENSMUST00000149664ENSMUST00000155964ENSMUST00000175896ENSMUST00000176229ENSMUSG00000026749ENSMUST00000054234ENSMUST00000112895ENSMUST00000112902ENSMUST00000151683ENSMUST00000156726ENSMUSG00000026750ENSMUST00000028083ENSMUST00000151981ENSMUSG00000084124ENSMUST00000120026ENSMUSG00000085950ENSMUST00000146404ENSMUSG00000087539ENSMUST00000137134ENSMUSG00000098383ENSMUST00000184325
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WH_0001ENSG00000106689ENST00000373615ENST00000446480ENST00000488674ENST00000560961ENSG00000119408ENST00000320246ENST00000373600ENST00000394199ENST00000423785ENST00000425237ENST00000444973ENST00000545174ENST00000546191ENSG00000227200ENST00000437461ENSG00000231227ENST00000421041ENSG00000234921ENST00000429482ENSG00000235204ENST00000426157ENSG00000236668ENST00000453529CIL_0006WH_0002ENSMUSG00000000247ENSMUST00000000253ENSMUST00000133661ENSMUST00000143783ENSMUST00000149664ENSMUST00000155964ENSMUST00000175896ENSMUSG00000026749ENSMUST00000054234ENSMUST00000112895ENSMUST00000112902ENSMUST00000151683ENSMUSG00000026750ENSMUST00000028083ENSMUST00000151981ENSMUSG00000084124ENSMUST00000120026ENSMUSG00000085950ENSMUST00000146404ENSMUSG00000087539ENSMUST00000137134ENSMUSG00000098383ENSMUST00000184325
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106689 ENST00000373615 N/A N/A N/A 6.159±0.00 N/A N/A N/A N/A 0.671±0.00 N/A N/A 0.032±0.00 0.274±0.00 0.505±0.12
ENST00000446480 N/A N/A N/A N/A N/A 0.219±0.00 0.049±0.00 N/A N/A N/A N/A 0.055±0.00 0.584±0.36 1.384±0.00
ENST00000488674 0.075±0.00 0.123±0.00 N/A 3.635±0.42 N/A N/A 0.070±0.00 N/A 0.331±0.00 0.063±0.00 N/A 0.028±0.00 0.420±0.23 0.467±0.00
ENST00000560961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.912±0.00 2.369±0.00
ENSG00000119408 ENST00000320246 3.361±0.00 4.670±0.00 2.196±0.00 2.655±0.37 3.440±0.00 2.364±0.00 0.710±0.32 3.919±2.77 3.953±0.41 3.779±0.48 N/A 1.013±0.00 3.801±0.70 1.519±0.00
ENST00000373596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373600 N/A N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394199 N/A N/A N/A N/A 2.336±0.00 N/A 0.406±0.00 3.178±0.00 N/A N/A 1.217±0.00 2.203±0.00 10.246±0.46 N/A
ENST00000422297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423785 N/A N/A N/A N/A N/A N/A 0.627±0.00 N/A 4.025±0.00 N/A N/A 2.594±0.00 N/A N/A
ENST00000425237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.590±0.00
ENST00000444973 N/A N/A N/A 12.592±0.00 N/A N/A N/A N/A N/A N/A N/A 24.514±0.00 32.646±0.00 5.925±0.00
ENST00000447379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545174 2.324±0.00 8.327±0.00 N/A 2.914±2.17 3.513±0.10 2.477±0.00 N/A 5.170±0.00 11.349±9.63 6.776±0.00 N/A 5.963±0.00 6.076±2.40 2.823±1.09
ENST00000546191 N/A N/A N/A N/A 1.231±0.00 N/A N/A N/A N/A 3.521±0.00 N/A N/A N/A N/A
ENSG00000227200 ENST00000437461 N/A 0.268±0.00 N/A 0.060±0.00 N/A N/A N/A 0.330±0.00 0.194±0.00 N/A N/A N/A N/A 1.794±0.00
ENSG00000231227 ENST00000421041 N/A N/A N/A 0.362±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.04
ENSG00000234921 ENST00000429482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.612±0.00
ENSG00000235204 ENST00000426157 N/A N/A 1.677±0.00 0.278±0.00 1.451±0.00 0.060±0.00 0.288±0.07 0.065±0.00 0.257±0.14 3.171±0.00 N/A 0.521±0.37 N/A 0.613±0.21
ENSG00000236668 ENST00000453529 0.007±0.00 0.007±0.00 N/A 0.287±0.14 N/A N/A N/A N/A 0.006±0.00 0.050±0.04 N/A N/A N/A 0.066±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000247 ENSMUST00000000253 0.017±0.01 0.020±0.01 0.005±0.00 15.924±8.74 0.409±0.09 0.058±0.04 0.020±0.01 0.036±0.02 1.739±0.53 0.009±0.00 0.013±0.00 0.141±0.10 2.024±1.17 N/A
ENSMUST00000133661 0.123±0.00 N/A 0.027±0.00 N/A 1.356±0.12 0.084±0.00 N/A N/A 1.593±0.12 N/A N/A 0.098±0.00 N/A N/A
ENSMUST00000143783 N/A N/A N/A 17.166±2.46 N/A N/A N/A 0.033±0.00 N/A N/A 0.218±0.00 0.057±0.00 N/A N/A
ENSMUST00000149664 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A
ENSMUST00000155964 0.135±0.00 N/A N/A N/A N/A 0.613±0.00 N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A
ENSMUST00000175896 0.071±0.00 N/A 0.003±0.00 N/A N/A 0.019±0.00 N/A 0.021±0.00 N/A 0.036±0.00 N/A 0.033±0.00 N/A N/A
ENSMUST00000176229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026749 ENSMUST00000054234 11.367±2.87 15.826±2.49 N/A 9.974±1.25 12.428±6.16 36.551±3.89 N/A 4.805±1.70 16.747±4.69 11.341±3.96 N/A 41.285±15.65 18.794±1.99 N/A
ENSMUST00000112895 17.577±6.25 N/A N/A 10.245±0.00 16.159±4.43 N/A N/A 5.075±0.00 8.961±0.00 6.100±0.65 N/A 10.613±3.53 37.990±17.13 N/A
ENSMUST00000112902 N/A 6.134±0.68 N/A N/A N/A N/A N/A N/A 10.254±1.28 N/A N/A 5.872±0.00 17.524±9.36 N/A
ENSMUST00000151683 N/A 63.572±6.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026750 ENSMUST00000028083 50.439±3.42 16.852±0.09 109.948±12.23 93.266±35.62 39.002±21.29 28.088±0.00 65.030±6.29 57.010±12.39 110.005±62.57 30.872±7.36 172.070±13.74 45.234±26.12 124.198±64.62 45.627±12.54
ENSMUST00000151981 41.098±7.78 44.865±8.69 N/A N/A 54.397±24.01 N/A 41.626±4.43 40.306±5.11 66.066±12.92 25.179±4.14 N/A 47.349±4.70 N/A 28.794±8.76
ENSMUSG00000084124 ENSMUST00000120026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.588±0.00 N/A
ENSMUSG00000085950 ENSMUST00000146404 0.069±0.02 0.168±0.06 0.026±0.01 0.252±0.04 0.140±0.05 0.112±0.07 0.067±0.01 0.090±0.07 0.025±0.02 0.143±0.06 0.039±0.02 0.166±0.06 0.083±0.03 1.000±0.44
ENSMUSG00000087539 ENSMUST00000137134 N/A N/A N/A 0.684±0.40 N/A N/A N/A N/A 0.076±0.06 N/A N/A N/A 0.087±0.08 1.288±0.72
ENSMUSG00000098383 ENSMUST00000184325 N/A N/A N/A 0.811±0.52 N/A N/A N/A N/A 0.038±0.02 N/A N/A N/A 0.232±0.21 0.281±0.19

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