C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335681 NPAS2-001 ENSG00000170485 9606 + 2:100820152-100996829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverENST00000335681
Transcript ID Heart Kidney Liver
ENST00000335681 7.886±0.00 9.618±0.00 6.721±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HH CIL_0004HH_0001 CGP 2:100562690-100996829
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004HI CIL_0004HI_0001 CGP 2:100820152-101024032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001047 ISS core promoter binding
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007165 IEA signal transduction
GO:0007417 TAS central nervous system development
GO:0032922 ISS circadian regulation of gene expression
GO:0042745 IEA circadian sleep/wake cycle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045475 IEA locomotor rhythm
GO:0045739 IMP positive regulation of DNA repair
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0051775 IDA response to redox state
GO:0051879 IDA Hsp90 protein binding
GO:0060548 IMP negative regulation of cell death
GO:2001020 IMP regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056815 Npas2-001 protein_coding Mus_musculus 0 2913
ENSMUST00000173050 Npas2-002 protein_coding Mus_musculus 0 468

Loading