C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056915 Pcdhb13-201 ENSMUSG00000047307 10090 + 18:37442517-37446209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056915 0.980±0.32 0.268±0.02 0.605±0.01 0.540±0.23 0.674±0.32 0.552±0.24 0.200±0.02 0.179±0.03 0.022±0.02 0.652±0.12 0.032±0.02 1.586±0.88 0.023±0.02 0.132±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000H CGP 18:37435621-37446209
CIL_00062S CIL_00062S_000S CGP 18:37442517-37451094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 1037
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 1844
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 918
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 869
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 918

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