C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231136 PCDHB6-001 ENSG00000113211 9606 + 5:141150022-141153287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000231136
Transcript ID Placenta
ENST00000231136 0.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636
CIL_00062S CIL_00062S_0006 CGP 5:141135218-141153287
CIL_00062S CIL_00062S_0007 CGP 5:141150022-141176383

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056915 Pcdhb13-201 protein_coding Mus_musculus 0 1844
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1062
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1037
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 1011
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 994
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 898
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 887
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 861
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 782
ENSMUST00000059571 Pcdhb19-201 protein_coding Mus_musculus 3e-22 111

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