C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SV2 related protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058472 Svop-001 ENSMUSG00000042078 10090 - 5:114026910-114091570 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000058472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000058472 0.009±0.00 0.718±0.27 0.010±0.00 22.443±7.49 0.013±0.00 0.183±0.07 0.017±0.00 0.157±0.07 0.032±0.05 0.013±0.00 0.020±0.00 0.073±0.05 0.089±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VS CIL_0001VS_0002 CGP 5:114003703-114091570
CIL_0001VR CIL_0001VR_0002 CGP 5:114026910-114123506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008021 ISS synaptic vesicle
GO:0015075 IEA ion transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000546618 SVOP-003 protein_coding Homo_sapiens 0 429
ENST00000548229 SVOP-002 retained_intron Homo_sapiens 0 427
ENST00000550436 SVOP-004 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000551211 SVOP-005 retained_intron Homo_sapiens 8.40779e-45 183
ENST00000610966 SVOP-001 protein_coding Homo_sapiens 0 2095

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