C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: progesterone receptor membrane component 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058578 Pgrmc2-001 ENSMUSG00000049940 10090 - 3:41066326-41083046 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058578 21.424±1.65 39.205±6.35 17.063±0.28 9.866±2.87 25.682±12.08 17.925±1.96 7.119±0.83 15.837±3.25 14.525±5.42 19.694±5.00 6.679±0.92 34.196±12.73 17.007±3.73 17.269±10.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YG CIL_0008YG_0002 VISTA 3:40857758-41459600
CIL_0006YL CIL_0006YL_0003 CGP 3:41021939-41083046
CIL_00001N CIL_00001N_0002 CGP 3:41066326-41616862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005496 IEA steroid binding
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0020037 IEA heme binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296425 PGRMC2-007 protein_coding Homo_sapiens 0 917
ENST00000394276 PGRMC2-002 protein_coding Homo_sapiens 0 479
ENST00000503588 PGRMC2-005 protein_coding Homo_sapiens 0 479
ENST00000503872 PGRMC2-004 protein_coding Homo_sapiens 0 479
ENST00000509070 PGRMC2-006 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000512483 PGRMC2-003 protein_coding Homo_sapiens 0 477
ENST00000520121 PGRMC2-001 protein_coding Homo_sapiens 0 946
ENST00000613358 PGRMC2-201 protein_coding Homo_sapiens 0 946

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