C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: progesterone receptor membrane component 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296425 PGRMC2-007 ENSG00000164040 9606 - 4:128269242-128287811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296425 39.928±0.00 12.072±0.00 1.032±0.00 5.874±3.27 21.802±20.43 12.069±9.67 6.548±5.54 12.202±7.86 7.908±5.81 7.483±6.47 6.478±0.00 10.705±8.57 25.881±7.06 9.885±5.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YG CIL_0008YG_0001 VISTA 4:128057618-128659090
CIL_0006YL CIL_0006YL_0002 CGP 4:128061268-128288829
CIL_00001N CIL_00001N_0001 CGP 4:128269237-128875224

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003707 TAS steroid hormone receptor activity
GO:0005496 IEA steroid binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0020037 IEA heme binding
GO:0043401 TAS steroid hormone mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058578 Pgrmc2-001 protein_coding Mus_musculus 0 917
ENSMUST00000124636 Pgrmc2-002 retained_intron Mus_musculus 0 433

Loading