C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sideroflexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059034 Sfxn5-003 ENSMUSG00000033720 10090 - 6:85234380-85333419 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000059034
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000059034 5.323±1.55 6.363±1.15 3.025±0.12 0.952±0.13 6.386±1.11 4.548±2.49 1.391±0.00 0.783±0.00 2.589±0.50 0.299±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0002DU CIL_0002DU_0003 CGP 6:85187438-85333422
CIL_0002DT CIL_0002DT_0003 CGP 6:85213051-85374634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 ISA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0008324 IEA cation transmembrane transporter activity
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272433 SFXN5-001 protein_coding Homo_sapiens 0 1055
ENST00000410065 SFXN5-002 protein_coding Homo_sapiens 0 802
ENST00000411783 SFXN5-003 protein_coding Homo_sapiens 0 780
ENST00000416579 SFXN5-014 processed_transcript Homo_sapiens 0 802
ENST00000442582 SFXN5-011 protein_coding Homo_sapiens 0 327
ENST00000450185 SFXN5-006 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000461352 SFXN5-004 processed_transcript Homo_sapiens 0 348
ENST00000463277 SFXN5-015 processed_transcript Homo_sapiens 0 662
ENST00000464825 SFXN5-018 processed_transcript Homo_sapiens 0 592
ENST00000474528 SFXN5-005 processed_transcript Homo_sapiens 0 966
ENST00000475630 SFXN5-020 processed_transcript Homo_sapiens 0 202
ENST00000479293 SFXN5-013 processed_transcript Homo_sapiens 0 257
ENST00000485057 SFXN5-023 processed_transcript Homo_sapiens 0 350
ENST00000487508 SFXN5-017 processed_transcript Homo_sapiens 0 592
ENST00000497144 SFXN5-022 processed_transcript Homo_sapiens 0 416

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