C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily A, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060067 Dnaja3-001 ENSMUSG00000004069 10090 + 16:4684070-4707695 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleOvaryPlacentaENSMUST00000060067
Transcript ID Heart Liver Muscle Ovary Placenta
ENSMUST00000060067 7.464±0.76 4.933±0.66 10.449±1.10 5.844±0.14 8.724±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009Y CIL_00009Y_0002 CGP 16:4616464-4679777
CIL_00009L CIL_00009L_0002 CGP 16:4626133-4679777
CIL_000003 CIL_000003_0003 CGP 16:4639941-4707695
CIL_0002BN CIL_0002BN_0002 CGP 16:4639989-4719356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0005083 IDA small GTPase regulator activity
GO:0005133 IEA interferon-gamma receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 IEA mitochondrial matrix
GO:0005829 IDA cytosol
GO:0005884 IEA actin filament
GO:0006264 IMP mitochondrial DNA replication
GO:0006457 IEA protein folding
GO:0006469 IEA negative regulation of protein kinase activity
GO:0006915 IMP apoptotic process
GO:0006919 IEA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006924 IMP activation-induced cell death of T cells
GO:0007005 IMP mitochondrion organization
GO:0007264 IDA small GTPase mediated signal transduction
GO:0007528 IMP neuromuscular junction development
GO:0007569 IDA cell aging
GO:0008134 IEA transcription factor binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0008385 IEA IkappaB kinase complex
GO:0009408 IEA response to heat
GO:0019897 IDA extrinsic component of plasma membrane
GO:0019901 IEA protein kinase binding
GO:0030054 IEA cell junction
GO:0030544 IEA Hsp70 protein binding
GO:0030971 IPI receptor tyrosine kinase binding
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0031594 IDA neuromuscular junction
GO:0032088 ISA negative regulation of NF-kappaB transcription factor activity
GO:0033077 IMP T cell differentiation in thymus
GO:0033256 IEA I-kappaB/NF-kappaB complex
GO:0034341 IEA response to interferon-gamma
GO:0042102 IMP positive regulation of T cell proliferation
GO:0042645 IEA mitochondrial nucleoid
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043069 IMP negative regulation of programmed cell death
GO:0043124 IEA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045211 IDA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0050821 IEA protein stabilization
GO:0051059 IEA NF-kappaB binding
GO:0051082 IPI unfolded protein binding
GO:0060336 IEA negative regulation of interferon-gamma-mediated signaling pathway
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262375 DNAJA3-001 protein_coding Homo_sapiens 0 1731
ENST00000355296 DNAJA3-002 protein_coding Homo_sapiens 0 1496
ENST00000431375 DNAJA3-201 protein_coding Homo_sapiens 0 937
ENST00000570857 DNAJA3-007 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000572009 DNAJA3-011 retained_intron Homo_sapiens 0 307
ENST00000572139 DNAJA3-010 processed_transcript Homo_sapiens 0 353
ENST00000573120 DNAJA3-013 retained_intron Homo_sapiens 0 335
ENST00000574895 DNAJA3-009 protein_coding Homo_sapiens 0 422
ENST00000575106 DNAJA3-006 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000576180 DNAJA3-004 retained_intron Homo_sapiens 0 322
ENST00000576911 DNAJA3-003 nonsense_mediated_decay Homo_sapiens 0 937
ENST00000577083 DNAJA3-005 retained_intron Homo_sapiens 0 429
ENST00000612103 DNAJA3-202 protein_coding Homo_sapiens 0 1731
ENST00000614397 DNAJA3-203 protein_coding Homo_sapiens 0 1506
ENST00000615114 DNAJA3-204 protein_coding Homo_sapiens 0 937

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