C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily A, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355296 DNAJA3-002 ENSG00000103423 9606 + 16:4425860-4456775 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355296 4.022±0.00 5.010±0.00 0.735±0.00 3.179±0.71 3.624±0.49 2.071±0.14 8.477±5.46 3.629±1.61 6.603±4.85 4.402±0.00 10.200±5.82 8.100±3.96 9.318±5.61 4.767±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000003 CIL_000003_0002 CGP 16:4371848-4456775
CIL_0002BN CIL_0002BN_0001 CGP 16:4425805-4495763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005133 IDA interferon-gamma receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0005829 IMP cytosol
GO:0005884 IDA actin filament
GO:0006457 IEA protein folding
GO:0006469 IDA negative regulation of protein kinase activity
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007528 IDA neuromuscular junction development
GO:0008134 IPI transcription factor binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0008385 IDA IkappaB kinase complex
GO:0009408 IEA response to heat
GO:0019897 ISS extrinsic component of plasma membrane
GO:0019901 IPI protein kinase binding
GO:0030054 IEA cell junction
GO:0031072 IEA heat shock protein binding
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0031594 ISS neuromuscular junction
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0033256 IDA I-kappaB/NF-kappaB complex
GO:0034341 IDA response to interferon-gamma
GO:0042645 IDA mitochondrial nucleoid
GO:0043065 IDA positive regulation of apoptotic process
GO:0043066 IDA negative regulation of apoptotic process
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043154 IDA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045211 ISS postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0050821 IDA protein stabilization
GO:0051059 IPI NF-kappaB binding
GO:0051082 IEA unfolded protein binding
GO:0060336 IDA negative regulation of interferon-gamma-mediated signaling pathway
GO:0071340 ISS skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115854 Dnaja3-002 protein_coding Mus_musculus 0 1567
ENSMUST00000060067 Dnaja3-001 protein_coding Mus_musculus 0 1496
ENSMUST00000138495 Dnaja3-003 retained_intron Mus_musculus 0 652

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