C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SH3-domain binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061239 Sh3bp1-002 ENSMUSG00000022436 10090 + 15:78899768-78912051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLungOvaryENSMUST00000061239
Transcript ID Colon Kidney Lung Ovary
ENSMUST00000061239 2.008±0.00 1.090±0.00 4.974±0.00 7.052±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00040D CIL_00040D_0002 CGP 15:78877190-78919517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007165 IEA signal transduction
GO:0017124 IPI SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357436 SH3BP1-001 protein_coding Homo_sapiens 0 1812
ENST00000417536 SH3BP1-002 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000451997 SH3BP1-008 nonsense_mediated_decay Homo_sapiens 0 1574
ENST00000466097 SH3BP1-005 retained_intron Homo_sapiens 0 667
ENST00000469947 SH3BP1-003 retained_intron Homo_sapiens 0 1349
ENST00000495174 SH3BP1-006 processed_transcript Homo_sapiens 0 1053

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