C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radixin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061352 Rdx-202 ENSMUSG00000032050 10090 + 9:52047941-52075177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalTestisENSMUST00000061352
Transcript ID Adrenal Testis
ENSMUST00000061352 3.573±1.11 3.489±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DH CIL_0008DH_0002 VISTA 9:51847924-52450392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005902 IDA microvillus
GO:0008092 IEA cytoskeletal protein binding
GO:0019898 IEA extrinsic component of membrane
GO:0030027 IDA lamellipodium
GO:0030033 IMP microvillus assembly
GO:0030175 IDA filopodium
GO:0032420 IDA stereocilium
GO:0045176 IMP apical protein localization
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343115 RDX-001 protein_coding Homo_sapiens 0 1685
ENST00000367074 GS1-309P15.4-001 processed_pseudogene Homo_sapiens 0 1328
ENST00000405097 RDX-002 protein_coding Homo_sapiens 0 1685
ENST00000528172 RP11-23F23.3-001 processed_pseudogene Homo_sapiens 0 1238
ENST00000528498 RDX-006 protein_coding Homo_sapiens 0 1685
ENST00000528556 RDX-013 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000529774 RDX-015 retained_intron Homo_sapiens 0 669
ENST00000530131 RDX-007 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000530301 RDX-004 protein_coding Homo_sapiens 0 473
ENST00000530749 RDX-005 nonsense_mediated_decay Homo_sapiens 0 1685
ENST00000532118 RDX-014 protein_coding Homo_sapiens 0 712
ENST00000533678 RDX-011 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000533991 RDX-010 protein_coding Homo_sapiens 0 580
ENST00000534683 RDX-012 protein_coding Homo_sapiens 0 492
ENST00000544551 RDX-201 protein_coding Homo_sapiens 0 843

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