C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 149
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062525 Rnf149-001 ENSMUSG00000048234 10090 - 1:39551296-39577405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062525 13.459±6.72 47.959±20.75 10.705±1.03 9.198±1.55 8.906±5.21 25.734±12.55 1.690±0.33 22.244±4.04 31.035±14.22 15.066±1.18 1.786±0.15 30.319±10.08 12.635±6.74 5.068±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HD CIL_0004HD_0002 CGP 1:39534992-39577405
CIL_0004HE CIL_0004HE_0002 CGP 1:39551296-39651182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031647 IDA regulation of protein stability
GO:0035690 IDA cellular response to drug
GO:0043409 IDA negative regulation of MAPK cascade
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295317 RNF149-001 protein_coding Homo_sapiens 0 1123
ENST00000424632 RNF149-002 nonsense_mediated_decay Homo_sapiens 0 983
ENST00000463726 RNF149-004 retained_intron Homo_sapiens 1.4013e-45 187

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