C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor II A, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063314 Gtf2a1-002 ENSMUSG00000020962 10090 - 12:91558688-91590487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryPlacentaTestisENSMUST00000063314
Transcript ID Adrenal Breast Colon Liver Ovary Placenta Testis
ENSMUST00000063314 6.884±1.81 4.015±0.52 3.096±0.54 1.856±0.33 8.894±4.20 3.885±0.00 6.066±3.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087I CIL_00087I_0002 VISTA 12:91377577-91981083
CIL_0004TT CIL_0004TT_0002 CGP 12:91400994-91590487
CIL_0004TS CIL_0004TS_0002 CGP 12:91555916-91788387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005672 IDA transcription factor TFIIA complex
GO:0005737 IDA cytoplasm
GO:0006367 IEA transcription initiation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298173 GTF2A1-004 nonsense_mediated_decay Homo_sapiens 0 1332
ENST00000434192 GTF2A1-003 protein_coding Homo_sapiens 0 1458
ENST00000553612 GTF2A1-001 protein_coding Homo_sapiens 0 2146
ENST00000556268 GTF2A1-002 retained_intron Homo_sapiens 0 575

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