C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor class A domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063775 Ldlrad4-201 ENSMUSG00000024544 10090 + 18:67933257-68255549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063775 10.356±4.61 7.170±1.02 8.258±0.00 2.960±0.07 6.646±1.15 5.852±2.83 7.042±0.50 9.999±2.69 3.299±1.24 10.390±1.67 1.724±0.68 12.207±2.99 0.504±0.47 1.116±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z8 CIL_0007Z8_0002 VISTA 18:67758776-68359713
CIL_0000LB CIL_0000LB_0002 CGP 18:67800107-68255549
CIL_0005Q2 CIL_0005Q2_0003 CGP 18:67933257-68300333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0010719 ISS negative regulation of epithelial to mesenchymal transition
GO:0010991 ISS negative regulation of SMAD protein complex assembly
GO:0016021 IEA integral component of membrane
GO:0030336 ISS negative regulation of cell migration
GO:0030512 IMP negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031901 ISS early endosome membrane
GO:0060394 ISS negative regulation of pathway-restricted SMAD protein phosphorylation
GO:0070412 IEA R-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359446 LDLRAD4-002 protein_coding Homo_sapiens 0 1426
ENST00000361303 LDLRAD4-006 retained_intron Homo_sapiens 0 981
ENST00000399848 LDLRAD4-001 protein_coding Homo_sapiens 0 785
ENST00000435606 LDLRAD4-007 retained_intron Homo_sapiens 0 785
ENST00000585931 LDLRAD4-004 protein_coding Homo_sapiens 0 981
ENST00000586222 LDLRAD4-012 protein_coding Homo_sapiens 0 368
ENST00000586765 LDLRAD4-018 protein_coding Homo_sapiens 0 634
ENST00000587757 LDLRAD4-003 protein_coding Homo_sapiens 0 876
ENST00000587905 LDLRAD4-010 protein_coding Homo_sapiens 0 468
ENST00000592991 LDLRAD4-008 protein_coding Homo_sapiens 0 664

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