C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064054 Syt1-006 ENSMUSG00000035864 10090 - 10:108497652-109010982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064054 0.102±0.03 3.518±0.00 0.301±0.08 66.298±57.40 0.080±0.05 1.173±0.04 0.128±0.08 0.199±0.22 0.089±0.07 0.090±0.02 0.053±0.00 0.931±0.37 0.032±0.02 0.040±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000884 CIL_000884_0002 VISTA 10:108287857-108889362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 ISS SNARE binding
GO:0005215 IEA transporter activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005544 ISS calcium-dependent phospholipid binding
GO:0005886 TAS plasma membrane
GO:0007269 IDA neurotransmitter secretion
GO:0008021 TAS synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0016079 IMP synaptic vesicle exocytosis
GO:0017075 ISS syntaxin-1 binding
GO:0030054 IEA cell junction
GO:0030141 IDA secretory granule
GO:0030672 IDA synaptic vesicle membrane
GO:0042734 IDA presynaptic membrane
GO:0043005 IDA neuron projection
GO:0048306 IPI calcium-dependent protein binding
GO:0048791 IDA calcium ion-dependent exocytosis of neurotransmitter
GO:0050750 ISO low-density lipoprotein particle receptor binding
GO:0050806 IMP positive regulation of synaptic transmission
GO:0051966 IMP regulation of synaptic transmission, glutamatergic
GO:1903305 ISS regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041861 syt1a-001 protein_coding Danio_rerio 0 721
ENST00000261205 SYT1-001 protein_coding Homo_sapiens 0 3596
ENST00000393240 SYT1-002 protein_coding Homo_sapiens 0 2948
ENST00000457153 SYT1-004 protein_coding Homo_sapiens 0 3539
ENST00000552074 SYT1-007 protein_coding Homo_sapiens 0 357
ENST00000552744 SYT1-005 protein_coding Homo_sapiens 0 2948

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