C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-strand selective monofunctional uracil DNA glycosylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064067 Smug1-201 ENSMUSG00000036061 10090 - 15:103153307-103158002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064067
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064067 0.671±0.00 1.710±0.54 0.687±0.00 2.525±1.74 2.278±1.70 1.507±0.95 0.943±0.03 0.901±0.24 1.416±0.00 0.557±0.00 3.415±2.10 3.087±0.80 0.619±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003L CIL_00003L_0002 CGP 15:103153307-103239816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000702 ISA oxidized base lesion DNA N-glycosylase activity
GO:0000703 IEA oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003697 ISA single-stranded DNA binding
GO:0004844 ISA uracil DNA N-glycosylase activity
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0006281 ISA DNA repair
GO:0006284 ISS base-excision repair
GO:0017065 ISS single-strand selective uracil DNA N-glycosylase activity
GO:0019104 ISS DNA N-glycosylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243112 SMUG1-008 protein_coding Homo_sapiens 0 472
ENST00000337581 SMUG1-005 protein_coding Homo_sapiens 0 863
ENST00000401977 SMUG1-020 protein_coding Homo_sapiens 0 863
ENST00000503306 SMUG1-018 protein_coding Homo_sapiens 0 267
ENST00000503447 SMUG1-009 retained_intron Homo_sapiens 0 329
ENST00000504338 SMUG1-017 protein_coding Homo_sapiens 0 590
ENST00000504797 SMUG1-016 protein_coding Homo_sapiens 0 320
ENST00000505128 SMUG1-007 protein_coding Homo_sapiens 0 549
ENST00000505662 SMUG1-006 processed_transcript Homo_sapiens 0 547
ENST00000506169 SMUG1-011 protein_coding Homo_sapiens 0 307
ENST00000506595 SMUG1-021 protein_coding Homo_sapiens 0 464
ENST00000507904 SMUG1-010 protein_coding Homo_sapiens 0 361
ENST00000508394 SMUG1-001 protein_coding Homo_sapiens 0 870
ENST00000509078 SMUG1-019 retained_intron Homo_sapiens 0 195
ENST00000509864 SMUG1-022 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000511522 SMUG1-012 retained_intron Homo_sapiens 0 549
ENST00000513838 SMUG1-003 protein_coding Homo_sapiens 0 464
ENST00000514196 SMUG1-013 protein_coding Homo_sapiens 0 472
ENST00000514685 SMUG1-004 protein_coding Homo_sapiens 0 464
ENST00000590640 SMUG1P1-001 processed_pseudogene Homo_sapiens 0 484

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