C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375255 DCAF17-001 ENSG00000115827 9606 + 2:171434251-171485052 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverLungOvaryPlacentaTestisENST00000375255
Transcript ID Bladder Colon Heart Liver Lung Ovary Placenta Testis
ENST00000375255 0.872±0.00 0.796±0.00 0.508±0.00 2.239±0.00 0.529±0.00 1.864±0.35 0.307±0.00 2.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S9 CIL_0004S9_0001 CGP 2:170990823-171434802
CIL_0002PA CIL_0002PA_0001 CGP 2:171317405-171485052
CIL_0003IN CIL_0003IN_0002 CGP 2:171434217-171558133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154704 Dcaf17-001 protein_coding Mus_musculus 0 2043
ENSMUST00000064141 Dcaf17-007 protein_coding Mus_musculus 0 1999
ENSMUST00000112167 Dcaf17-006 nonsense_mediated_decay Mus_musculus 0 1897
ENSMUST00000102701 Dcaf17-004 protein_coding Mus_musculus 0 1838
ENSMUST00000130292 Dcaf17-002 protein_coding Mus_musculus 0 1356
ENSMUST00000112159 Dcaf17-003 protein_coding Mus_musculus 0 944
ENSMUST00000135357 Dcaf17-008 protein_coding Mus_musculus 0 774
ENSMUST00000136299 Dcaf17-005 nonsense_mediated_decay Mus_musculus 0 298
ENSMUST00000132619 Dcaf17-009 processed_transcript Mus_musculus 0 237

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