C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 79
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064576 Ccdc79-001 ENSMUSG00000052616 10090 - 8:104446719-104509887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000064576
Transcript ID Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000064576 0.090±0.02 0.019±0.00 0.012±0.00 0.055±0.00 0.213±0.20 0.029±0.00 1.114±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0002 VISTA 8:104309522-104912018
CIL_0004IU CIL_0004IU_0002 CGP 8:104417674-104509910
CIL_0004IV CIL_0004IV_0002 CGP 8:104446719-104534637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0007129 IMP synapsis
GO:0045141 IMP meiotic telomere clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313294 CCDC79-001 nonsense_mediated_decay Homo_sapiens 0 1075
ENST00000433154 CCDC79-201 protein_coding Homo_sapiens 0 1685
ENST00000558713 CCDC79-003 protein_coding Homo_sapiens 0 1685
ENST00000559050 CCDC79-005 protein_coding Homo_sapiens 0 392
ENST00000561333 CCDC79-004 processed_transcript Homo_sapiens 0 1415

Loading