C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 4-aminobutyrate aminotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065987 Abat-001 ENSMUSG00000057880 10090 + 16:8513429-8621568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065987 7.871±2.31 19.671±7.57 5.594±1.57 23.195±4.95 1.759±0.59 27.565±7.67 3.997±0.76 112.362±5.66 46.311±35.70 1.045±0.20 0.618±0.27 12.239±4.24 5.497±5.79 5.806±2.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RL CIL_0007RL_0002 VISTA 16:7923606-8524476
CIL_0000ER CIL_0000ER_0002 CGP 16:8470788-8621568
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003867 ISS 4-aminobutyrate transaminase activity
GO:0005739 ISS mitochondrion
GO:0007620 IEA copulation
GO:0007626 IEA locomotory behavior
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0010039 IEA response to iron ion
GO:0030170 ISS pyridoxal phosphate binding
GO:0032144 ISS 4-aminobutyrate transaminase complex
GO:0032145 ISS succinate-semialdehyde dehydrogenase binding
GO:0035094 IEA response to nicotine
GO:0042135 IEA neurotransmitter catabolic process
GO:0042220 IEA response to cocaine
GO:0042493 IEA response to drug
GO:0042803 ISS protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0045471 IEA response to ethanol
GO:0045776 IEA negative regulation of blood pressure
GO:0047298 IEA (S)-3-amino-2-methylpropionate transaminase activity
GO:0048148 IMP behavioral response to cocaine
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268251 ABAT-001 protein_coding Homo_sapiens 0 1860
ENST00000396600 ABAT-201 protein_coding Homo_sapiens 0 1797
ENST00000425191 ABAT-005 protein_coding Homo_sapiens 0 1783
ENST00000564453 ABAT-015 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000564869 TMEM186-002 processed_transcript Homo_sapiens 6e-38 161
ENST00000566590 ABAT-002 nonsense_mediated_decay Homo_sapiens 0 1637
ENST00000567812 ABAT-003 protein_coding Homo_sapiens 0 1783
ENST00000569156 ABAT-006 protein_coding Homo_sapiens 0 1570

Loading