C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 paralog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482007 RAD51C-003 ENSG00000108384 9606 + 17:58692615-58734327 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000482007
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000482007 1.113±0.00 2.921±0.00 2.204±0.00 3.339±0.00 3.267±0.00 3.430±0.00 1.359±0.00 1.070±0.00 1.244±0.00 4.670±1.85 3.896±1.17 7.477±4.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000566 CIL_000566_0002 CGP 17:58692573-58985176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008094 IEA DNA-dependent ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129400 Rad51c-003 nonsense_mediated_decay Mus_musculus 0 1051
ENSMUST00000007790 Rad51c-001 protein_coding Mus_musculus 0 575
ENSMUST00000067692 Rad51c-002 protein_coding Mus_musculus 0 575
ENSMUST00000153073 Rad51c-004 nonsense_mediated_decay Mus_musculus 0 479

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