C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 88C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068411 Ccdc88c-201 ENSMUSG00000021182 10090 - 12:100912700-101028983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000068411
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000068411 2.067±0.00 0.518±0.18 3.956±0.77 3.893±2.75 6.410±0.60 0.885±0.20 1.321±0.00 0.560±0.68 4.815±0.60 2.459±0.87 0.607±0.07 4.636±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UN CIL_0001UN_0002 CGP 12:100876682-101028983
CIL_0000AE CIL_0000AE_0002 CGP 12:100912700-101083702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001932 IMP regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0016055 IEA Wnt signaling pathway
GO:0030165 IPI PDZ domain binding
GO:0031648 IMP protein destabilization
GO:0043621 IPI protein self-association
GO:0051260 IPI protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331194 CCDC88C-201 protein_coding Homo_sapiens 0 691
ENST00000334448 CCDC88C-006 retained_intron Homo_sapiens 0 411
ENST00000389856 CCDC88C-003 protein_coding Homo_sapiens 0 263
ENST00000389857 CCDC88C-001 protein_coding Homo_sapiens 0 5688
ENST00000553403 CCDC88C-002 protein_coding Homo_sapiens 0 339
ENST00000553437 CCDC88C-009 retained_intron Homo_sapiens 0 422
ENST00000554165 CCDC88C-007 processed_transcript Homo_sapiens 0 305
ENST00000554872 CCDC88C-004 retained_intron Homo_sapiens 0 931
ENST00000555995 CCDC88C-010 retained_intron Homo_sapiens 0 359
ENST00000556726 CCDC88C-005 nonsense_mediated_decay Homo_sapiens 0 1044

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